Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3302

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3301 and Shewana3_3302 are separated by 26 nucleotidesShewana3_3302 and Shewana3_3303 are separated by 104 nucleotides Shewana3_3301: Shewana3_3301 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,955,522 to 3,960,531 _3301 Shewana3_3302: Shewana3_3302 - ISPsy11, transposase OrfA (RefSeq), at 3,960,558 to 3,960,950 _3302 Shewana3_3303: Shewana3_3303 - integrase catalytic subunit (RefSeq), at 3,961,055 to 3,961,774 _3303 Position (kb) 3960 3961Strain fitness (log2 ratio) -2 -1 0 1at 3959.632 kb on + strand, within Shewana3_3301at 3959.773 kb on + strand, within Shewana3_3301at 3959.877 kb on - strand, within Shewana3_3301at 3959.966 kb on + strand, within Shewana3_3301at 3959.973 kb on - strand, within Shewana3_3301at 3960.032 kb on - strandat 3960.032 kb on - strandat 3960.093 kb on + strandat 3960.113 kb on + strandat 3960.190 kb on - strandat 3960.291 kb on + strandat 3960.328 kb on - strandat 3960.343 kb on - strandat 3960.343 kb on - strandat 3960.374 kb on + strandat 3960.382 kb on - strandat 3960.452 kb on + strandat 3960.457 kb on + strandat 3960.473 kb on + strandat 3960.481 kb on - strandat 3960.510 kb on - strandat 3961.815 kb on + strandat 3961.820 kb on + strandat 3961.823 kb on - strandat 3961.858 kb on + strandat 3961.884 kb on - strandat 3961.933 kb on - strandat 3961.933 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,959,632 + Shewana3_3301 0.82 +0.4
3,959,773 + Shewana3_3301 0.85 -0.8
3,959,877 - Shewana3_3301 0.87 +0.4
3,959,966 + Shewana3_3301 0.89 +0.1
3,959,973 - Shewana3_3301 0.89 -0.3
3,960,032 - +0.2
3,960,032 - +0.9
3,960,093 + -0.6
3,960,113 + -0.4
3,960,190 - +0.7
3,960,291 + +0.5
3,960,328 - +0.1
3,960,343 - -0.4
3,960,343 - +0.4
3,960,374 + +0.9
3,960,382 - -0.7
3,960,452 + +0.8
3,960,457 + +0.3
3,960,473 + +0.5
3,960,481 - +0.2
3,960,510 - +0.1
3,961,815 + -0.6
3,961,820 + +0.7
3,961,823 - +0.6
3,961,858 + +1.0
3,961,884 - -0.9
3,961,933 - -2.4
3,961,933 - +0.4

Or see this region's nucleotide sequence