Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3296

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3294 and Shewana3_3295 are separated by 391 nucleotidesShewana3_3295 and lysS are separated by 102 nucleotideslysS and Shewana3_3297 are separated by 29 nucleotides Shewana3_3294: Shewana3_3294 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,943,374 to 3,943,877 _3294 Shewana3_3295: Shewana3_3295 - hypothetical protein (RefSeq), at 3,944,269 to 3,944,712 _3295 Shewana3_3296: lysS - lysyl-tRNA synthetase (RefSeq), at 3,944,815 to 3,946,317 lysS Shewana3_3297: Shewana3_3297 - peptide chain release factor 2 (RefSeq), at 3,946,347 to 3,947,405 _3297 Position (kb) 3944 3945 3946 3947Strain fitness (log2 ratio) -2 -1 0 1at 3943.840 kb on + strandat 3943.845 kb on + strandat 3943.848 kb on - strandat 3943.851 kb on + strandat 3943.853 kb on - strandat 3943.859 kb on - strandat 3943.976 kb on + strandat 3943.994 kb on - strandat 3944.044 kb on + strandat 3944.156 kb on + strandat 3944.156 kb on + strandat 3944.156 kb on + strandat 3944.158 kb on - strandat 3944.163 kb on - strandat 3944.164 kb on - strandat 3944.164 kb on - strandat 3944.191 kb on + strandat 3944.199 kb on - strandat 3944.221 kb on - strandat 3944.223 kb on + strandat 3944.223 kb on + strandat 3944.317 kb on - strand, within Shewana3_3295at 3944.317 kb on - strand, within Shewana3_3295at 3944.327 kb on + strand, within Shewana3_3295at 3944.335 kb on + strand, within Shewana3_3295at 3944.394 kb on + strand, within Shewana3_3295at 3944.428 kb on - strand, within Shewana3_3295at 3944.554 kb on - strand, within Shewana3_3295

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,943,840 + -0.1
3,943,845 + +0.1
3,943,848 - +0.4
3,943,851 + +0.3
3,943,853 - +1.5
3,943,859 - +0.7
3,943,976 + -0.5
3,943,994 - -1.8
3,944,044 + +0.8
3,944,156 + +0.1
3,944,156 + -2.1
3,944,156 + +0.9
3,944,158 - +0.2
3,944,163 - -0.7
3,944,164 - -0.1
3,944,164 - -1.0
3,944,191 + +0.4
3,944,199 - -0.0
3,944,221 - +0.2
3,944,223 + +0.2
3,944,223 + +0.3
3,944,317 - Shewana3_3295 0.11 +0.4
3,944,317 - Shewana3_3295 0.11 +0.7
3,944,327 + Shewana3_3295 0.13 +0.6
3,944,335 + Shewana3_3295 0.15 +0.5
3,944,394 + Shewana3_3295 0.28 +0.2
3,944,428 - Shewana3_3295 0.36 +0.7
3,944,554 - Shewana3_3295 0.64 +0.0

Or see this region's nucleotide sequence