Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3240 and hmuV are separated by 11 nucleotides hmuV and Shewana3_3242 are separated by 82 nucleotides Shewana3_3242 and Shewana3_3243 overlap by 4 nucleotides Shewana3_3243 and Shewana3_3244 are separated by 111 nucleotides
Shewana3_3240: Shewana3_3240 - transport system permease protein (RefSeq), at 3,884,808 to 3,885,824
_3240
Shewana3_3241: hmuV - hemin importer ATP-binding subunit (RefSeq), at 3,885,836 to 3,886,654
hmuV
Shewana3_3242: Shewana3_3242 - hypothetical protein (RefSeq), at 3,886,737 to 3,887,078
_3242
Shewana3_3243: Shewana3_3243 - hypothetical protein (RefSeq), at 3,887,075 to 3,887,440
_3243
Shewana3_3244: Shewana3_3244 - FAD dependent oxidoreductase (RefSeq), at 3,887,552 to 3,889,027
_3244
Position (kb)
3886
3887
3888 Strain fitness (log2 ratio)
-2
-1
0
1 at 3885.840 kb on - strand at 3886.018 kb on + strand, within hmuV at 3886.026 kb on - strand, within hmuV at 3886.142 kb on + strand, within hmuV at 3886.150 kb on - strand, within hmuV at 3886.329 kb on + strand, within hmuV at 3886.453 kb on + strand, within hmuV at 3886.461 kb on - strand, within hmuV at 3886.494 kb on - strand, within hmuV at 3886.529 kb on - strand, within hmuV at 3886.695 kb on + strand at 3886.698 kb on - strand at 3886.734 kb on - strand at 3886.734 kb on - strand at 3886.792 kb on - strand, within Shewana3_3242 at 3886.843 kb on + strand, within Shewana3_3242 at 3887.145 kb on + strand, within Shewana3_3243 at 3887.145 kb on + strand, within Shewana3_3243 at 3887.181 kb on - strand, within Shewana3_3243 at 3887.220 kb on - strand, within Shewana3_3243 at 3887.521 kb on + strand at 3887.616 kb on + strand at 3887.628 kb on + strand at 3887.636 kb on - strand at 3887.717 kb on + strand, within Shewana3_3244 at 3887.751 kb on + strand, within Shewana3_3244 at 3887.911 kb on - strand, within Shewana3_3244 at 3887.948 kb on - strand, within Shewana3_3244
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,885,840 - +0.3 3,886,018 + hmuV Shewana3_3241 0.22 -0.9 3,886,026 - hmuV Shewana3_3241 0.23 +0.9 3,886,142 + hmuV Shewana3_3241 0.37 -2.5 3,886,150 - hmuV Shewana3_3241 0.38 +0.8 3,886,329 + hmuV Shewana3_3241 0.60 -0.4 3,886,453 + hmuV Shewana3_3241 0.75 -1.2 3,886,461 - hmuV Shewana3_3241 0.76 +0.5 3,886,494 - hmuV Shewana3_3241 0.80 +0.7 3,886,529 - hmuV Shewana3_3241 0.85 -1.0 3,886,695 + -0.8 3,886,698 - +0.7 3,886,734 - +0.3 3,886,734 - +1.4 3,886,792 - Shewana3_3242 0.16 -0.0 3,886,843 + Shewana3_3242 0.31 -1.4 3,887,145 + Shewana3_3243 0.19 +0.1 3,887,145 + Shewana3_3243 0.19 +0.5 3,887,181 - Shewana3_3243 0.29 +0.5 3,887,220 - Shewana3_3243 0.40 -1.8 3,887,521 + -0.9 3,887,616 + +0.3 3,887,628 + -0.9 3,887,636 - +0.5 3,887,717 + Shewana3_3244 0.11 -1.5 3,887,751 + Shewana3_3244 0.13 +0.3 3,887,911 - Shewana3_3244 0.24 +0.4 3,887,948 - Shewana3_3244 0.27 -1.1
Or see this region's nucleotide sequence