Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3242

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3240 and hmuV are separated by 11 nucleotideshmuV and Shewana3_3242 are separated by 82 nucleotidesShewana3_3242 and Shewana3_3243 overlap by 4 nucleotidesShewana3_3243 and Shewana3_3244 are separated by 111 nucleotides Shewana3_3240: Shewana3_3240 - transport system permease protein (RefSeq), at 3,884,808 to 3,885,824 _3240 Shewana3_3241: hmuV - hemin importer ATP-binding subunit (RefSeq), at 3,885,836 to 3,886,654 hmuV Shewana3_3242: Shewana3_3242 - hypothetical protein (RefSeq), at 3,886,737 to 3,887,078 _3242 Shewana3_3243: Shewana3_3243 - hypothetical protein (RefSeq), at 3,887,075 to 3,887,440 _3243 Shewana3_3244: Shewana3_3244 - FAD dependent oxidoreductase (RefSeq), at 3,887,552 to 3,889,027 _3244 Position (kb) 3886 3887 3888Strain fitness (log2 ratio) -2 -1 0 1at 3885.840 kb on - strandat 3886.018 kb on + strand, within hmuVat 3886.026 kb on - strand, within hmuVat 3886.142 kb on + strand, within hmuVat 3886.150 kb on - strand, within hmuVat 3886.329 kb on + strand, within hmuVat 3886.453 kb on + strand, within hmuVat 3886.461 kb on - strand, within hmuVat 3886.494 kb on - strand, within hmuVat 3886.529 kb on - strand, within hmuVat 3886.695 kb on + strandat 3886.698 kb on - strandat 3886.734 kb on - strandat 3886.734 kb on - strandat 3886.792 kb on - strand, within Shewana3_3242at 3886.843 kb on + strand, within Shewana3_3242at 3887.145 kb on + strand, within Shewana3_3243at 3887.145 kb on + strand, within Shewana3_3243at 3887.181 kb on - strand, within Shewana3_3243at 3887.220 kb on - strand, within Shewana3_3243at 3887.521 kb on + strandat 3887.616 kb on + strandat 3887.628 kb on + strandat 3887.636 kb on - strandat 3887.717 kb on + strand, within Shewana3_3244at 3887.751 kb on + strand, within Shewana3_3244at 3887.911 kb on - strand, within Shewana3_3244at 3887.948 kb on - strand, within Shewana3_3244

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,885,840 - +0.3
3,886,018 + hmuV Shewana3_3241 0.22 -0.9
3,886,026 - hmuV Shewana3_3241 0.23 +0.9
3,886,142 + hmuV Shewana3_3241 0.37 -2.5
3,886,150 - hmuV Shewana3_3241 0.38 +0.8
3,886,329 + hmuV Shewana3_3241 0.60 -0.4
3,886,453 + hmuV Shewana3_3241 0.75 -1.2
3,886,461 - hmuV Shewana3_3241 0.76 +0.5
3,886,494 - hmuV Shewana3_3241 0.80 +0.7
3,886,529 - hmuV Shewana3_3241 0.85 -1.0
3,886,695 + -0.8
3,886,698 - +0.7
3,886,734 - +0.3
3,886,734 - +1.4
3,886,792 - Shewana3_3242 0.16 -0.0
3,886,843 + Shewana3_3242 0.31 -1.4
3,887,145 + Shewana3_3243 0.19 +0.1
3,887,145 + Shewana3_3243 0.19 +0.5
3,887,181 - Shewana3_3243 0.29 +0.5
3,887,220 - Shewana3_3243 0.40 -1.8
3,887,521 + -0.9
3,887,616 + +0.3
3,887,628 + -0.9
3,887,636 - +0.5
3,887,717 + Shewana3_3244 0.11 -1.5
3,887,751 + Shewana3_3244 0.13 +0.3
3,887,911 - Shewana3_3244 0.24 +0.4
3,887,948 - Shewana3_3244 0.27 -1.1

Or see this region's nucleotide sequence