Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3130

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3129 and Shewana3_3130 are separated by 3 nucleotidesShewana3_3130 and Shewana3_3131 are separated by 15 nucleotides Shewana3_3129: Shewana3_3129 - type IV pilin biogenesis protein, putative (RefSeq), at 3,753,033 to 3,756,539 _3129 Shewana3_3130: Shewana3_3130 - type IV pilus assembly protein PilX (RefSeq), at 3,756,543 to 3,757,004 _3130 Shewana3_3131: Shewana3_3131 - prepilin-type cleavage/methylation-like protein (RefSeq), at 3,757,020 to 3,758,012 _3131 Position (kb) 3756 3757 3758Strain fitness (log2 ratio) -2 -1 0 1at 3755.545 kb on + strand, within Shewana3_3129at 3755.551 kb on - strand, within Shewana3_3129at 3755.594 kb on - strand, within Shewana3_3129at 3755.596 kb on + strand, within Shewana3_3129at 3755.640 kb on + strand, within Shewana3_3129at 3755.640 kb on + strand, within Shewana3_3129at 3755.705 kb on + strand, within Shewana3_3129at 3755.743 kb on - strand, within Shewana3_3129at 3755.833 kb on - strand, within Shewana3_3129at 3755.914 kb on + strand, within Shewana3_3129at 3755.917 kb on + strand, within Shewana3_3129at 3755.917 kb on + strand, within Shewana3_3129at 3755.923 kb on - strand, within Shewana3_3129at 3755.924 kb on - strand, within Shewana3_3129at 3756.073 kb on - strand, within Shewana3_3129at 3756.073 kb on - strand, within Shewana3_3129at 3756.083 kb on - strand, within Shewana3_3129at 3756.085 kb on + strand, within Shewana3_3129at 3756.093 kb on - strand, within Shewana3_3129at 3756.146 kb on - strand, within Shewana3_3129at 3756.156 kb on + strand, within Shewana3_3129at 3756.164 kb on - strand, within Shewana3_3129at 3756.171 kb on - strand, within Shewana3_3129at 3756.264 kb on - strandat 3756.273 kb on + strandat 3756.283 kb on - strandat 3756.326 kb on - strandat 3756.395 kb on - strandat 3756.461 kb on - strandat 3757.141 kb on + strand, within Shewana3_3131at 3757.275 kb on - strand, within Shewana3_3131at 3757.346 kb on + strand, within Shewana3_3131at 3757.354 kb on - strand, within Shewana3_3131

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,755,545 + Shewana3_3129 0.72 +0.4
3,755,551 - Shewana3_3129 0.72 +0.3
3,755,594 - Shewana3_3129 0.73 +0.7
3,755,596 + Shewana3_3129 0.73 +0.5
3,755,640 + Shewana3_3129 0.74 -0.6
3,755,640 + Shewana3_3129 0.74 -0.8
3,755,705 + Shewana3_3129 0.76 +0.8
3,755,743 - Shewana3_3129 0.77 +0.0
3,755,833 - Shewana3_3129 0.80 +0.5
3,755,914 + Shewana3_3129 0.82 -0.2
3,755,917 + Shewana3_3129 0.82 -0.6
3,755,917 + Shewana3_3129 0.82 +0.3
3,755,923 - Shewana3_3129 0.82 -0.9
3,755,924 - Shewana3_3129 0.82 +0.7
3,756,073 - Shewana3_3129 0.87 +0.6
3,756,073 - Shewana3_3129 0.87 +0.1
3,756,083 - Shewana3_3129 0.87 +0.0
3,756,085 + Shewana3_3129 0.87 -0.3
3,756,093 - Shewana3_3129 0.87 -1.8
3,756,146 - Shewana3_3129 0.89 +0.1
3,756,156 + Shewana3_3129 0.89 -0.5
3,756,164 - Shewana3_3129 0.89 +0.0
3,756,171 - Shewana3_3129 0.89 +0.5
3,756,264 - -0.5
3,756,273 + -0.2
3,756,283 - -0.1
3,756,326 - -0.5
3,756,395 - -0.4
3,756,461 - +0.5
3,757,141 + Shewana3_3131 0.12 +0.4
3,757,275 - Shewana3_3131 0.26 +0.0
3,757,346 + Shewana3_3131 0.33 +0.0
3,757,354 - Shewana3_3131 0.34 -0.3

Or see this region's nucleotide sequence