Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3129 and Shewana3_3130 are separated by 3 nucleotides Shewana3_3130 and Shewana3_3131 are separated by 15 nucleotides
Shewana3_3129: Shewana3_3129 - type IV pilin biogenesis protein, putative (RefSeq), at 3,753,033 to 3,756,539
_3129
Shewana3_3130: Shewana3_3130 - type IV pilus assembly protein PilX (RefSeq), at 3,756,543 to 3,757,004
_3130
Shewana3_3131: Shewana3_3131 - prepilin-type cleavage/methylation-like protein (RefSeq), at 3,757,020 to 3,758,012
_3131
Position (kb)
3756
3757
3758 Strain fitness (log2 ratio)
-2
-1
0
1 at 3755.545 kb on + strand, within Shewana3_3129 at 3755.551 kb on - strand, within Shewana3_3129 at 3755.594 kb on - strand, within Shewana3_3129 at 3755.596 kb on + strand, within Shewana3_3129 at 3755.640 kb on + strand, within Shewana3_3129 at 3755.640 kb on + strand, within Shewana3_3129 at 3755.705 kb on + strand, within Shewana3_3129 at 3755.743 kb on - strand, within Shewana3_3129 at 3755.833 kb on - strand, within Shewana3_3129 at 3755.914 kb on + strand, within Shewana3_3129 at 3755.917 kb on + strand, within Shewana3_3129 at 3755.917 kb on + strand, within Shewana3_3129 at 3755.923 kb on - strand, within Shewana3_3129 at 3755.924 kb on - strand, within Shewana3_3129 at 3756.073 kb on - strand, within Shewana3_3129 at 3756.073 kb on - strand, within Shewana3_3129 at 3756.083 kb on - strand, within Shewana3_3129 at 3756.085 kb on + strand, within Shewana3_3129 at 3756.093 kb on - strand, within Shewana3_3129 at 3756.146 kb on - strand, within Shewana3_3129 at 3756.156 kb on + strand, within Shewana3_3129 at 3756.164 kb on - strand, within Shewana3_3129 at 3756.171 kb on - strand, within Shewana3_3129 at 3756.264 kb on - strand at 3756.273 kb on + strand at 3756.283 kb on - strand at 3756.326 kb on - strand at 3756.395 kb on - strand at 3756.461 kb on - strand at 3757.141 kb on + strand, within Shewana3_3131 at 3757.275 kb on - strand, within Shewana3_3131 at 3757.346 kb on + strand, within Shewana3_3131 at 3757.354 kb on - strand, within Shewana3_3131
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,755,545 + Shewana3_3129 0.72 +0.4 3,755,551 - Shewana3_3129 0.72 +0.3 3,755,594 - Shewana3_3129 0.73 +0.7 3,755,596 + Shewana3_3129 0.73 +0.5 3,755,640 + Shewana3_3129 0.74 -0.6 3,755,640 + Shewana3_3129 0.74 -0.8 3,755,705 + Shewana3_3129 0.76 +0.8 3,755,743 - Shewana3_3129 0.77 +0.0 3,755,833 - Shewana3_3129 0.80 +0.5 3,755,914 + Shewana3_3129 0.82 -0.2 3,755,917 + Shewana3_3129 0.82 -0.6 3,755,917 + Shewana3_3129 0.82 +0.3 3,755,923 - Shewana3_3129 0.82 -0.9 3,755,924 - Shewana3_3129 0.82 +0.7 3,756,073 - Shewana3_3129 0.87 +0.6 3,756,073 - Shewana3_3129 0.87 +0.1 3,756,083 - Shewana3_3129 0.87 +0.0 3,756,085 + Shewana3_3129 0.87 -0.3 3,756,093 - Shewana3_3129 0.87 -1.8 3,756,146 - Shewana3_3129 0.89 +0.1 3,756,156 + Shewana3_3129 0.89 -0.5 3,756,164 - Shewana3_3129 0.89 +0.0 3,756,171 - Shewana3_3129 0.89 +0.5 3,756,264 - -0.5 3,756,273 + -0.2 3,756,283 - -0.1 3,756,326 - -0.5 3,756,395 - -0.4 3,756,461 - +0.5 3,757,141 + Shewana3_3131 0.12 +0.4 3,757,275 - Shewana3_3131 0.26 +0.0 3,757,346 + Shewana3_3131 0.33 +0.0 3,757,354 - Shewana3_3131 0.34 -0.3
Or see this region's nucleotide sequence