Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3037

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnhaR and Shewana3_3037 are separated by 95 nucleotidesShewana3_3037 and Shewana3_3038 are separated by 2 nucleotides Shewana3_3036: nhaR - transcriptional activator NhaR (RefSeq), at 3,640,469 to 3,641,377 nhaR Shewana3_3037: Shewana3_3037 - hypothetical protein (RefSeq), at 3,641,473 to 3,641,859 _3037 Shewana3_3038: Shewana3_3038 - Na+/H+ antiporter NhaA (RefSeq), at 3,641,862 to 3,643,031 _3038 Position (kb) 3641 3642Strain fitness (log2 ratio) -3 -2 -1 0 1at 3640.865 kb on + strand, within nhaRat 3641.137 kb on + strand, within nhaRat 3641.276 kb on + strand, within nhaRat 3641.290 kb on + strandat 3641.298 kb on - strandat 3641.305 kb on - strandat 3641.411 kb on + strandat 3641.421 kb on + strandat 3641.428 kb on + strandat 3641.647 kb on + strand, within Shewana3_3037at 3641.665 kb on - strand, within Shewana3_3037at 3641.665 kb on - strand, within Shewana3_3037at 3641.929 kb on - strandat 3641.961 kb on + strandat 3642.180 kb on - strand, within Shewana3_3038at 3642.264 kb on + strand, within Shewana3_3038at 3642.369 kb on + strand, within Shewana3_3038at 3642.375 kb on - strand, within Shewana3_3038at 3642.438 kb on + strand, within Shewana3_3038at 3642.446 kb on - strand, within Shewana3_3038at 3642.446 kb on - strand, within Shewana3_3038at 3642.775 kb on + strand, within Shewana3_3038at 3642.836 kb on - strand, within Shewana3_3038at 3642.853 kb on + strand, within Shewana3_3038

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,640,865 + nhaR Shewana3_3036 0.44 +0.8
3,641,137 + nhaR Shewana3_3036 0.73 -1.6
3,641,276 + nhaR Shewana3_3036 0.89 +0.3
3,641,290 + +0.5
3,641,298 - -2.4
3,641,305 - -2.0
3,641,411 + +0.7
3,641,421 + -0.8
3,641,428 + +0.4
3,641,647 + Shewana3_3037 0.45 +1.0
3,641,665 - Shewana3_3037 0.50 -3.6
3,641,665 - Shewana3_3037 0.50 +0.4
3,641,929 - -0.4
3,641,961 + +0.7
3,642,180 - Shewana3_3038 0.27 +0.3
3,642,264 + Shewana3_3038 0.34 -0.8
3,642,369 + Shewana3_3038 0.43 +0.0
3,642,375 - Shewana3_3038 0.44 +0.4
3,642,438 + Shewana3_3038 0.49 +0.1
3,642,446 - Shewana3_3038 0.50 -1.0
3,642,446 - Shewana3_3038 0.50 -1.7
3,642,775 + Shewana3_3038 0.78 -1.9
3,642,836 - Shewana3_3038 0.83 +0.3
3,642,853 + Shewana3_3038 0.85 -0.9

Or see this region's nucleotide sequence