Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3025

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3023 and Shewana3_3024 are separated by 89 nucleotidesShewana3_3024 and era are separated by 49 nucleotidesera and rnc overlap by 4 nucleotidesrnc and Shewana3_3027 are separated by 1 nucleotides Shewana3_3023: Shewana3_3023 - pyridoxine 5'-phosphate synthase (RefSeq), at 3,628,834 to 3,629,571 _3023 Shewana3_3024: Shewana3_3024 - DNA repair protein RecO (RefSeq), at 3,629,661 to 3,630,362 _3024 Shewana3_3025: era - GTP-binding protein Era (RefSeq), at 3,630,412 to 3,631,431 era Shewana3_3026: rnc - ribonuclease III (RefSeq), at 3,631,428 to 3,632,108 rnc Shewana3_3027: Shewana3_3027 - signal peptidase I (RefSeq), at 3,632,110 to 3,633,027 _3027 Position (kb) 3630 3631 3632Strain fitness (log2 ratio) -2 -1 0 1at 3629.629 kb on - strandat 3629.629 kb on - strandat 3629.840 kb on + strand, within Shewana3_3024at 3629.975 kb on + strand, within Shewana3_3024at 3629.983 kb on - strand, within Shewana3_3024at 3629.983 kb on - strand, within Shewana3_3024at 3629.990 kb on + strand, within Shewana3_3024at 3630.066 kb on - strand, within Shewana3_3024at 3630.187 kb on - strand, within Shewana3_3024at 3630.328 kb on - strandat 3630.409 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,629,629 - -1.2
3,629,629 - -0.7
3,629,840 + Shewana3_3024 0.25 -0.8
3,629,975 + Shewana3_3024 0.45 +0.3
3,629,983 - Shewana3_3024 0.46 -2.3
3,629,983 - Shewana3_3024 0.46 -0.9
3,629,990 + Shewana3_3024 0.47 +0.3
3,630,066 - Shewana3_3024 0.58 -1.9
3,630,187 - Shewana3_3024 0.75 -2.2
3,630,328 - +0.1
3,630,409 + -1.3

Or see this region's nucleotide sequence