Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3009

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3008 and Shewana3_3009 are separated by 45 nucleotidesShewana3_3009 and Shewana3_3010 are separated by 163 nucleotides Shewana3_3008: Shewana3_3008 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,614,307 to 3,615,476 _3008 Shewana3_3009: Shewana3_3009 - hypothetical protein (RefSeq), at 3,615,522 to 3,615,857 _3009 Shewana3_3010: Shewana3_3010 - oxidoreductase FAD-binding subunit (RefSeq), at 3,616,021 to 3,617,163 _3010 Position (kb) 3615 3616Strain fitness (log2 ratio) -1 0 1at 3614.686 kb on + strand, within Shewana3_3008at 3614.694 kb on - strand, within Shewana3_3008at 3614.942 kb on + strand, within Shewana3_3008at 3615.221 kb on - strand, within Shewana3_3008at 3615.374 kb on - strandat 3615.527 kb on + strandat 3615.535 kb on - strandat 3616.051 kb on + strandat 3616.098 kb on + strandat 3616.098 kb on + strandat 3616.106 kb on - strandat 3616.106 kb on - strandat 3616.170 kb on - strand, within Shewana3_3010at 3616.431 kb on + strand, within Shewana3_3010at 3616.519 kb on - strand, within Shewana3_3010at 3616.601 kb on + strand, within Shewana3_3010at 3616.601 kb on + strand, within Shewana3_3010at 3616.641 kb on + strand, within Shewana3_3010

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,614,686 + Shewana3_3008 0.32 -0.1
3,614,694 - Shewana3_3008 0.33 +0.6
3,614,942 + Shewana3_3008 0.54 +0.3
3,615,221 - Shewana3_3008 0.78 -1.0
3,615,374 - +0.5
3,615,527 + -0.7
3,615,535 - -1.5
3,616,051 + +0.9
3,616,098 + +0.5
3,616,098 + +0.1
3,616,106 - -1.1
3,616,106 - -0.6
3,616,170 - Shewana3_3010 0.13 +1.2
3,616,431 + Shewana3_3010 0.36 +0.5
3,616,519 - Shewana3_3010 0.44 -1.7
3,616,601 + Shewana3_3010 0.51 +0.5
3,616,601 + Shewana3_3010 0.51 +0.6
3,616,641 + Shewana3_3010 0.54 -0.4

Or see this region's nucleotide sequence