Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2952

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2950 and Shewana3_2951 overlap by 11 nucleotidesShewana3_2951 and smpB are separated by 253 nucleotidessmpB and ssrA are separated by 72 nucleotidesssrA and Shewana3_2953 are separated by 240 nucleotides Shewana3_2950: Shewana3_2950 - hypothetical protein (RefSeq), at 3,544,204 to 3,544,539 _2950 Shewana3_2951: Shewana3_2951 - cyclase/dehydrase (RefSeq), at 3,544,529 to 3,544,966 _2951 Shewana3_2952: smpB - SsrA-binding protein (RefSeq), at 3,545,220 to 3,545,711 smpB Shewana3_R0116: ssrA - no description, at 3,545,784 to 3,546,138 ssrA Shewana3_2953: Shewana3_2953 - phage integrase family protein (RefSeq), at 3,546,379 to 3,547,605 _2953 Position (kb) 3545 3546Strain fitness (log2 ratio) -1 0 1 2at 3544.220 kb on - strandat 3544.247 kb on + strand, within Shewana3_2950at 3544.255 kb on - strand, within Shewana3_2950at 3544.255 kb on - strand, within Shewana3_2950at 3546.114 kb on + strandat 3546.349 kb on + strandat 3546.351 kb on + strandat 3546.374 kb on + strandat 3546.479 kb on + strandat 3546.487 kb on - strandat 3546.487 kb on - strandat 3546.625 kb on + strand, within Shewana3_2953

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,544,220 - +0.2
3,544,247 + Shewana3_2950 0.13 +1.9
3,544,255 - Shewana3_2950 0.15 +0.4
3,544,255 - Shewana3_2950 0.15 +0.2
3,546,114 + -0.8
3,546,349 + +0.9
3,546,351 + -1.6
3,546,374 + +1.5
3,546,479 + +0.9
3,546,487 - -1.1
3,546,487 - +0.6
3,546,625 + Shewana3_2953 0.20 -0.8

Or see this region's nucleotide sequence