Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2950 and Shewana3_2951 overlap by 11 nucleotides Shewana3_2951 and smpB are separated by 253 nucleotides smpB and ssrA are separated by 72 nucleotides ssrA and Shewana3_2953 are separated by 240 nucleotides
Shewana3_2950: Shewana3_2950 - hypothetical protein (RefSeq), at 3,544,204 to 3,544,539
_2950
Shewana3_2951: Shewana3_2951 - cyclase/dehydrase (RefSeq), at 3,544,529 to 3,544,966
_2951
Shewana3_2952: smpB - SsrA-binding protein (RefSeq), at 3,545,220 to 3,545,711
smpB
Shewana3_R0116: ssrA - no description, at 3,545,784 to 3,546,138
ssrA
Shewana3_2953: Shewana3_2953 - phage integrase family protein (RefSeq), at 3,546,379 to 3,547,605
_2953
Position (kb)
3545
3546 Strain fitness (log2 ratio)
-1
0
1
2 at 3544.220 kb on - strand at 3544.247 kb on + strand, within Shewana3_2950 at 3544.255 kb on - strand, within Shewana3_2950 at 3544.255 kb on - strand, within Shewana3_2950 at 3546.114 kb on + strand at 3546.349 kb on + strand at 3546.351 kb on + strand at 3546.374 kb on + strand at 3546.479 kb on + strand at 3546.487 kb on - strand at 3546.487 kb on - strand at 3546.625 kb on + strand, within Shewana3_2953
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,544,220 - +0.2 3,544,247 + Shewana3_2950 0.13 +1.9 3,544,255 - Shewana3_2950 0.15 +0.4 3,544,255 - Shewana3_2950 0.15 +0.2 3,546,114 + -0.8 3,546,349 + +0.9 3,546,351 + -1.6 3,546,374 + +1.5 3,546,479 + +0.9 3,546,487 - -1.1 3,546,487 - +0.6 3,546,625 + Shewana3_2953 0.20 -0.8
Or see this region's nucleotide sequence