Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2815

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttsf and rpsB are separated by 119 nucleotidesrpsB and Shewana3_R0115 are separated by 23 nucleotidesShewana3_R0115 and Shewana3_2816 are separated by 94 nucleotides Shewana3_2814: tsf - elongation factor Ts (RefSeq), at 3,360,814 to 3,361,665 tsf Shewana3_2815: rpsB - 30S ribosomal protein S2 (RefSeq), at 3,361,785 to 3,362,513 rpsB Shewana3_R0115: Shewana3_R0115 - t44 RNA (NCBI), at 3,362,537 to 3,362,688 _R0115 Shewana3_2816: Shewana3_2816 - methionine aminopeptidase (RefSeq), at 3,362,783 to 3,363,619 _2816 Position (kb) 3361 3362 3363Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3362.841 kb on - strandat 3362.870 kb on + strand, within Shewana3_2816at 3362.923 kb on - strand, within Shewana3_2816at 3362.942 kb on - strand, within Shewana3_2816at 3363.218 kb on - strand, within Shewana3_2816at 3363.244 kb on + strand, within Shewana3_2816at 3363.407 kb on + strand, within Shewana3_2816at 3363.440 kb on + strand, within Shewana3_2816at 3363.470 kb on + strand, within Shewana3_2816at 3363.470 kb on + strand, within Shewana3_2816at 3363.470 kb on + strand, within Shewana3_2816at 3363.470 kb on + strand, within Shewana3_2816at 3363.470 kb on + strand, within Shewana3_2816at 3363.470 kb on + strand, within Shewana3_2816at 3363.470 kb on + strand, within Shewana3_2816at 3363.478 kb on - strand, within Shewana3_2816at 3363.478 kb on - strand, within Shewana3_2816

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,362,841 - -2.5
3,362,870 + Shewana3_2816 0.10 -2.4
3,362,923 - Shewana3_2816 0.17 -2.4
3,362,942 - Shewana3_2816 0.19 -2.3
3,363,218 - Shewana3_2816 0.52 -3.0
3,363,244 + Shewana3_2816 0.55 -3.2
3,363,407 + Shewana3_2816 0.75 -2.9
3,363,440 + Shewana3_2816 0.78 -2.7
3,363,470 + Shewana3_2816 0.82 -1.4
3,363,470 + Shewana3_2816 0.82 -2.9
3,363,470 + Shewana3_2816 0.82 -3.6
3,363,470 + Shewana3_2816 0.82 -3.7
3,363,470 + Shewana3_2816 0.82 -1.8
3,363,470 + Shewana3_2816 0.82 -2.7
3,363,470 + Shewana3_2816 0.82 -2.4
3,363,478 - Shewana3_2816 0.83 -4.0
3,363,478 - Shewana3_2816 0.83 -0.4

Or see this region's nucleotide sequence