Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2811

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2809 and Shewana3_2810 are separated by 4 nucleotidesShewana3_2810 and Shewana3_2811 are separated by 20 nucleotidesShewana3_2811 and frr are separated by 82 nucleotidesfrr and pyrH are separated by 29 nucleotides Shewana3_2809: Shewana3_2809 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (RefSeq), at 3,356,445 to 3,357,635 _2809 Shewana3_2810: Shewana3_2810 - phosphatidate cytidylyltransferase (RefSeq), at 3,357,640 to 3,358,497 _2810 Shewana3_2811: Shewana3_2811 - undecaprenyl pyrophosphate synthetase (RefSeq), at 3,358,518 to 3,359,345 _2811 Shewana3_2812: frr - ribosome recycling factor (RefSeq), at 3,359,428 to 3,359,985 frr Shewana3_2813: pyrH - uridylate kinase (RefSeq), at 3,360,015 to 3,360,743 pyrH Position (kb) 3358 3359 3360Strain fitness (log2 ratio) -1 0 1 2at 3359.363 kb on - strandat 3359.387 kb on + strandat 3359.390 kb on - strandat 3359.390 kb on - strandat 3359.395 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,359,363 - -0.6
3,359,387 + +1.8
3,359,390 - -0.1
3,359,390 - -0.4
3,359,395 - +0.5

Or see this region's nucleotide sequence