Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2626

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2625 and Shewana3_2626 overlap by 1 nucleotidesShewana3_2626 and Shewana3_2627 are separated by 585 nucleotides Shewana3_2625: Shewana3_2625 - MotA/TolQ/ExbB proton channel (RefSeq), at 3,129,056 to 3,130,411 _2625 Shewana3_2626: Shewana3_2626 - hypothetical protein (RefSeq), at 3,130,411 to 3,131,193 _2626 Shewana3_2627: Shewana3_2627 - TonB-dependent receptor (RefSeq), at 3,131,779 to 3,134,592 _2627 Position (kb) 3130 3131 3132Strain fitness (log2 ratio) -2 -1 0 1 2at 3131.398 kb on + strandat 3131.425 kb on - strandat 3131.454 kb on - strandat 3131.478 kb on + strandat 3131.478 kb on + strandat 3131.486 kb on - strandat 3131.519 kb on + strandat 3131.645 kb on - strandat 3131.653 kb on + strandat 3131.800 kb on + strandat 3131.800 kb on + strandat 3131.835 kb on + strandat 3131.843 kb on - strandat 3131.848 kb on + strandat 3131.911 kb on + strandat 3131.936 kb on + strandat 3131.944 kb on - strandat 3131.974 kb on - strandat 3131.987 kb on + strandat 3131.987 kb on - strandat 3131.987 kb on - strandat 3131.987 kb on - strandat 3132.023 kb on + strandat 3132.031 kb on + strandat 3132.031 kb on - strandat 3132.031 kb on - strandat 3132.031 kb on - strandat 3132.080 kb on - strand, within Shewana3_2627at 3132.107 kb on + strand, within Shewana3_2627at 3132.115 kb on - strand, within Shewana3_2627at 3132.122 kb on + strand, within Shewana3_2627at 3132.130 kb on - strand, within Shewana3_2627at 3132.130 kb on - strand, within Shewana3_2627at 3132.169 kb on - strand, within Shewana3_2627

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
3,131,398 + +0.4
3,131,425 - -0.5
3,131,454 - -0.8
3,131,478 + +0.2
3,131,478 + -1.3
3,131,486 - -0.7
3,131,519 + -1.4
3,131,645 - +0.3
3,131,653 + -2.0
3,131,800 + +0.8
3,131,800 + +1.1
3,131,835 + +0.3
3,131,843 - +0.5
3,131,848 + -1.0
3,131,911 + +0.7
3,131,936 + +2.0
3,131,944 - +0.7
3,131,974 - -1.0
3,131,987 + -0.4
3,131,987 - +0.2
3,131,987 - +0.5
3,131,987 - -1.1
3,132,023 + -1.0
3,132,031 + +0.3
3,132,031 - +0.6
3,132,031 - +0.4
3,132,031 - +0.5
3,132,080 - Shewana3_2627 0.11 +0.2
3,132,107 + Shewana3_2627 0.12 +1.2
3,132,115 - Shewana3_2627 0.12 +0.7
3,132,122 + Shewana3_2627 0.12 +1.6
3,132,130 - Shewana3_2627 0.12 +1.1
3,132,130 - Shewana3_2627 0.12 -1.0
3,132,169 - Shewana3_2627 0.14 +0.4

Or see this region's nucleotide sequence