Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2525

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2524 and grxA are separated by 60 nucleotidesgrxA and Shewana3_2526 are separated by 58 nucleotides Shewana3_2524: Shewana3_2524 - type III restriction enzyme, res subunit (RefSeq), at 3,021,537 to 3,023,309 _2524 Shewana3_2525: grxA - glutaredoxin 1 (RefSeq), at 3,023,370 to 3,023,630 grxA Shewana3_2526: Shewana3_2526 - hypothetical protein (RefSeq), at 3,023,689 to 3,024,852 _2526 Position (kb) 3023 3024Strain fitness (log2 ratio) -2 -1 0 1at 3022.585 kb on + strand, within Shewana3_2524at 3022.864 kb on - strand, within Shewana3_2524at 3022.878 kb on + strand, within Shewana3_2524at 3023.198 kb on - strandat 3023.335 kb on - strandat 3023.755 kb on + strandat 3023.775 kb on - strandat 3023.855 kb on - strand, within Shewana3_2526at 3023.893 kb on + strand, within Shewana3_2526at 3023.895 kb on + strand, within Shewana3_2526at 3024.256 kb on + strand, within Shewana3_2526

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
3,022,585 + Shewana3_2524 0.59 -0.2
3,022,864 - Shewana3_2524 0.75 +1.1
3,022,878 + Shewana3_2524 0.76 -1.9
3,023,198 - +0.4
3,023,335 - +0.3
3,023,755 + +0.5
3,023,775 - +1.1
3,023,855 - Shewana3_2526 0.14 -1.7
3,023,893 + Shewana3_2526 0.18 +0.8
3,023,895 + Shewana3_2526 0.18 +0.5
3,024,256 + Shewana3_2526 0.49 +0.8

Or see this region's nucleotide sequence