Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2520

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2519 and Shewana3_2520 are separated by 122 nucleotidesShewana3_2520 and Shewana3_2521 are separated by 503 nucleotides Shewana3_2519: Shewana3_2519 - biotin synthase (RefSeq), at 3,011,043 to 3,012,095 _2519 Shewana3_2520: Shewana3_2520 - aminotransferase (RefSeq), at 3,012,218 to 3,013,576 _2520 Shewana3_2521: Shewana3_2521 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,014,080 to 3,015,681 _2521 Position (kb) 3012 3013 3014Strain fitness (log2 ratio) -2 -1 0 1at 3013.570 kb on + strandat 3013.609 kb on + strandat 3013.609 kb on + strandat 3013.609 kb on + strandat 3013.622 kb on - strandat 3013.632 kb on - strandat 3013.637 kb on - strandat 3013.644 kb on + strandat 3013.649 kb on + strandat 3013.652 kb on - strandat 3013.652 kb on - strandat 3013.682 kb on - strandat 3013.698 kb on + strandat 3013.852 kb on - strandat 3014.234 kb on + strandat 3014.237 kb on - strandat 3014.242 kb on - strand, within Shewana3_2521at 3014.431 kb on + strand, within Shewana3_2521at 3014.546 kb on + strand, within Shewana3_2521

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,013,570 + -1.2
3,013,609 + +0.3
3,013,609 + +0.9
3,013,609 + +0.0
3,013,622 - +0.1
3,013,632 - +0.5
3,013,637 - +0.3
3,013,644 + -1.4
3,013,649 + -1.1
3,013,652 - +0.2
3,013,652 - -1.3
3,013,682 - -0.2
3,013,698 + +0.6
3,013,852 - -0.7
3,014,234 + -1.9
3,014,237 - +0.8
3,014,242 - Shewana3_2521 0.10 +0.4
3,014,431 + Shewana3_2521 0.22 +0.5
3,014,546 + Shewana3_2521 0.29 +0.2

Or see this region's nucleotide sequence