Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2435 and Shewana3_2436 overlap by 4 nucleotides Shewana3_2436 and Shewana3_2437 are separated by 164 nucleotides Shewana3_2437 and nadE are separated by 166 nucleotides
Shewana3_2435: Shewana3_2435 - diguanylate cyclase (RefSeq), at 2,919,485 to 2,921,665
_2435
Shewana3_2436: Shewana3_2436 - hypothetical protein (RefSeq), at 2,921,662 to 2,923,128
_2436
Shewana3_2437: Shewana3_2437 - hypothetical protein (RefSeq), at 2,923,293 to 2,923,814
_2437
Shewana3_2438: nadE - NAD synthetase (RefSeq), at 2,923,981 to 2,924,871
nadE
Position (kb)
2921
2922
2923
2924 Strain fitness (log2 ratio)
-1
0
1 at 2920.683 kb on + strand, within Shewana3_2435 at 2920.814 kb on + strand, within Shewana3_2435 at 2920.861 kb on - strand, within Shewana3_2435 at 2921.043 kb on + strand, within Shewana3_2435 at 2921.102 kb on + strand, within Shewana3_2435 at 2921.304 kb on - strand, within Shewana3_2435 at 2921.522 kb on - strand at 2921.530 kb on + strand at 2921.540 kb on - strand at 2921.691 kb on + strand at 2921.871 kb on - strand, within Shewana3_2436 at 2921.893 kb on - strand, within Shewana3_2436 at 2922.027 kb on - strand, within Shewana3_2436 at 2922.029 kb on + strand, within Shewana3_2436 at 2922.240 kb on + strand, within Shewana3_2436 at 2922.248 kb on - strand, within Shewana3_2436 at 2922.286 kb on - strand, within Shewana3_2436 at 2922.500 kb on - strand, within Shewana3_2436 at 2922.600 kb on - strand, within Shewana3_2436 at 2922.663 kb on + strand, within Shewana3_2436 at 2922.671 kb on - strand, within Shewana3_2436 at 2922.781 kb on - strand, within Shewana3_2436 at 2923.376 kb on + strand, within Shewana3_2437 at 2923.474 kb on - strand, within Shewana3_2437 at 2923.547 kb on + strand, within Shewana3_2437 at 2923.721 kb on - strand, within Shewana3_2437 at 2923.723 kb on + strand, within Shewana3_2437 at 2923.733 kb on - strand, within Shewana3_2437 at 2923.808 kb on + strand at 2923.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 2,920,683 + Shewana3_2435 0.55 +0.1 2,920,814 + Shewana3_2435 0.61 +0.8 2,920,861 - Shewana3_2435 0.63 +0.8 2,921,043 + Shewana3_2435 0.71 +1.4 2,921,102 + Shewana3_2435 0.74 +0.6 2,921,304 - Shewana3_2435 0.83 +0.0 2,921,522 - +0.6 2,921,530 + +0.1 2,921,540 - -0.7 2,921,691 + -1.0 2,921,871 - Shewana3_2436 0.14 +0.8 2,921,893 - Shewana3_2436 0.16 +0.1 2,922,027 - Shewana3_2436 0.25 +0.4 2,922,029 + Shewana3_2436 0.25 +1.0 2,922,240 + Shewana3_2436 0.39 +0.1 2,922,248 - Shewana3_2436 0.40 +0.9 2,922,286 - Shewana3_2436 0.43 +0.9 2,922,500 - Shewana3_2436 0.57 -1.3 2,922,600 - Shewana3_2436 0.64 +0.5 2,922,663 + Shewana3_2436 0.68 +0.3 2,922,671 - Shewana3_2436 0.69 -0.4 2,922,781 - Shewana3_2436 0.76 +0.1 2,923,376 + Shewana3_2437 0.16 +0.7 2,923,474 - Shewana3_2437 0.35 -0.9 2,923,547 + Shewana3_2437 0.49 -0.5 2,923,721 - Shewana3_2437 0.82 +1.4 2,923,723 + Shewana3_2437 0.82 -0.1 2,923,733 - Shewana3_2437 0.84 +0.3 2,923,808 + +0.2 2,923,881 - +0.7
Or see this region's nucleotide sequence