Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2410 and Shewana3_2411 are separated by 45 nucleotides Shewana3_2411 and Shewana3_2412 are separated by 231 nucleotides Shewana3_2412 and Shewana3_2413 are separated by 32 nucleotides
Shewana3_2410: Shewana3_2410 - vault protein inter-alpha-trypsin subunit (RefSeq), at 2,888,800 to 2,891,055
_2410
Shewana3_2411: Shewana3_2411 - OmpA/MotB domain-containing protein (RefSeq), at 2,891,101 to 2,891,895
_2411
Shewana3_2412: Shewana3_2412 - two component transcriptional regulator (RefSeq), at 2,892,127 to 2,892,819
_2412
Shewana3_2413: Shewana3_2413 - ATPase domain-containing protein (RefSeq), at 2,892,852 to 2,895,011
_2413
Position (kb)
2891
2892 Strain fitness (log2 ratio)
-2
-1
0
1 at 2890.320 kb on - strand, within Shewana3_2410 at 2890.402 kb on - strand, within Shewana3_2410 at 2890.618 kb on + strand, within Shewana3_2410 at 2890.762 kb on - strand, within Shewana3_2410 at 2890.767 kb on - strand, within Shewana3_2410 at 2890.957 kb on + strand at 2890.957 kb on + strand at 2891.154 kb on - strand at 2891.159 kb on - strand at 2891.221 kb on + strand, within Shewana3_2411 at 2891.374 kb on + strand, within Shewana3_2411 at 2891.461 kb on - strand, within Shewana3_2411 at 2892.216 kb on - strand, within Shewana3_2412 at 2892.319 kb on - strand, within Shewana3_2412 at 2892.350 kb on - strand, within Shewana3_2412 at 2892.457 kb on - strand, within Shewana3_2412 at 2892.620 kb on - strand, within Shewana3_2412 at 2892.670 kb on - strand, within Shewana3_2412 at 2892.710 kb on - strand, within Shewana3_2412 at 2892.793 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 2,890,320 - Shewana3_2410 0.67 +0.4 2,890,402 - Shewana3_2410 0.71 -0.9 2,890,618 + Shewana3_2410 0.81 +0.3 2,890,762 - Shewana3_2410 0.87 +0.1 2,890,767 - Shewana3_2410 0.87 -0.5 2,890,957 + -1.8 2,890,957 + -0.6 2,891,154 - -2.0 2,891,159 - +0.5 2,891,221 + Shewana3_2411 0.15 -1.0 2,891,374 + Shewana3_2411 0.34 -0.5 2,891,461 - Shewana3_2411 0.45 -1.0 2,892,216 - Shewana3_2412 0.13 +1.1 2,892,319 - Shewana3_2412 0.28 -0.2 2,892,350 - Shewana3_2412 0.32 -0.1 2,892,457 - Shewana3_2412 0.48 +0.6 2,892,620 - Shewana3_2412 0.71 -0.6 2,892,670 - Shewana3_2412 0.78 -0.3 2,892,710 - Shewana3_2412 0.84 +1.1 2,892,793 + +0.6
Or see this region's nucleotide sequence