Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2163 and Shewana3_2164 are separated by 188 nucleotides Shewana3_2164 and Shewana3_2165 overlap by 4 nucleotides Shewana3_2165 and Shewana3_2166 are separated by 139 nucleotides
Shewana3_2163: Shewana3_2163 - radical activating enzyme (RefSeq), at 2,592,129 to 2,592,797
_2163
Shewana3_2164: Shewana3_2164 - queuosine biosynthesis protein QueC (RefSeq), at 2,592,986 to 2,593,705
_2164
Shewana3_2165: Shewana3_2165 - rhomboid family protein (RefSeq), at 2,593,702 to 2,594,307
_2165
Shewana3_2166: Shewana3_2166 - excinuclease ABC subunit B (RefSeq), at 2,594,447 to 2,596,468
_2166
Position (kb)
2593
2594
2595 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2592.920 kb on - strand at 2593.225 kb on - strand, within Shewana3_2164 at 2593.278 kb on + strand, within Shewana3_2164 at 2593.329 kb on - strand, within Shewana3_2164 at 2593.550 kb on + strand, within Shewana3_2164 at 2593.550 kb on + strand, within Shewana3_2164 at 2593.550 kb on + strand, within Shewana3_2164 at 2593.558 kb on - strand, within Shewana3_2164 at 2593.694 kb on + strand at 2593.773 kb on + strand, within Shewana3_2165 at 2593.812 kb on + strand, within Shewana3_2165 at 2593.858 kb on + strand, within Shewana3_2165 at 2594.014 kb on - strand, within Shewana3_2165 at 2594.045 kb on + strand, within Shewana3_2165 at 2594.177 kb on - strand at 2594.378 kb on + strand at 2594.497 kb on - strand at 2594.573 kb on - strand at 2594.637 kb on + strand at 2594.699 kb on - strand, within Shewana3_2166 at 2594.723 kb on - strand, within Shewana3_2166 at 2594.763 kb on + strand, within Shewana3_2166 at 2594.783 kb on - strand, within Shewana3_2166 at 2594.941 kb on - strand, within Shewana3_2166 at 2594.941 kb on - strand, within Shewana3_2166 at 2595.013 kb on + strand, within Shewana3_2166 at 2595.201 kb on - strand, within Shewana3_2166 at 2595.263 kb on - strand, within Shewana3_2166
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 2,592,920 - -0.1 2,593,225 - Shewana3_2164 0.33 +2.5 2,593,278 + Shewana3_2164 0.41 +0.4 2,593,329 - Shewana3_2164 0.48 +2.1 2,593,550 + Shewana3_2164 0.78 +0.8 2,593,550 + Shewana3_2164 0.78 +0.1 2,593,550 + Shewana3_2164 0.78 -0.5 2,593,558 - Shewana3_2164 0.79 +1.9 2,593,694 + -0.1 2,593,773 + Shewana3_2165 0.12 +3.1 2,593,812 + Shewana3_2165 0.18 +3.6 2,593,858 + Shewana3_2165 0.26 +0.3 2,594,014 - Shewana3_2165 0.51 +0.5 2,594,045 + Shewana3_2165 0.57 +2.3 2,594,177 - +0.8 2,594,378 + +1.0 2,594,497 - -0.5 2,594,573 - +0.6 2,594,637 + -0.5 2,594,699 - Shewana3_2166 0.12 -0.4 2,594,723 - Shewana3_2166 0.14 -1.1 2,594,763 + Shewana3_2166 0.16 -2.6 2,594,783 - Shewana3_2166 0.17 -2.3 2,594,941 - Shewana3_2166 0.24 +0.2 2,594,941 - Shewana3_2166 0.24 -0.9 2,595,013 + Shewana3_2166 0.28 +0.3 2,595,201 - Shewana3_2166 0.37 -0.4 2,595,263 - Shewana3_2166 0.40 -0.3
Or see this region's nucleotide sequence