Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0094

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2162 and Shewana3_R0092 are separated by 125 nucleotidesShewana3_R0092 and Shewana3_R0093 are separated by 39 nucleotidesShewana3_R0093 and Shewana3_R0094 are separated by 130 nucleotidesShewana3_R0094 and Shewana3_2163 are separated by 195 nucleotides Shewana3_2162: Shewana3_2162 - hypothetical protein (RefSeq), at 2,590,896 to 2,591,384 _2162 Shewana3_R0092: Shewana3_R0092 - tRNA-Tyr (RefSeq), at 2,591,510 to 2,591,594 _R0092 Shewana3_R0093: Shewana3_R0093 - tRNA-Tyr (RefSeq), at 2,591,634 to 2,591,718 _R0093 Shewana3_R0094: Shewana3_R0094 - tRNA-Tyr (RefSeq), at 2,591,849 to 2,591,933 _R0094 Shewana3_2163: Shewana3_2163 - radical activating enzyme (RefSeq), at 2,592,129 to 2,592,797 _2163 Position (kb) 2591 2592Strain fitness (log2 ratio) -1 0 1at 2592.094 kb on + strandat 2592.367 kb on - strand, within Shewana3_2163at 2592.513 kb on - strand, within Shewana3_2163at 2592.556 kb on + strand, within Shewana3_2163at 2592.627 kb on + strand, within Shewana3_2163at 2592.920 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,592,094 + +0.6
2,592,367 - Shewana3_2163 0.36 +0.6
2,592,513 - Shewana3_2163 0.57 +0.1
2,592,556 + Shewana3_2163 0.64 -1.4
2,592,627 + Shewana3_2163 0.74 -0.7
2,592,920 - -0.1

Or see this region's nucleotide sequence