Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2043

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2041 and Shewana3_2042 are separated by 221 nucleotidesShewana3_2042 and Shewana3_2043 are separated by 155 nucleotidesShewana3_2043 and infC are separated by 114 nucleotidesinfC and rpmI are separated by 85 nucleotidesrpmI and rplT are separated by 16 nucleotides Shewana3_2041: Shewana3_2041 - hypothetical protein (RefSeq), at 2,450,212 to 2,450,412 _2041 Shewana3_2042: Shewana3_2042 - no description, at 2,450,634 to 2,451,113 _2042 Shewana3_2043: Shewana3_2043 - threonyl-tRNA synthetase (RefSeq), at 2,451,269 to 2,453,197 _2043 Shewana3_2044: infC - translation initiation factor IF-3 (RefSeq), at 2,453,312 to 2,453,743 infC Shewana3_2045: rpmI - 50S ribosomal protein L35 (RefSeq), at 2,453,829 to 2,454,023 rpmI Shewana3_2046: rplT - 50S ribosomal protein L20 (RefSeq), at 2,454,040 to 2,454,396 rplT Position (kb) 2451 2452 2453 2454Strain fitness (log2 ratio) -1 0 1 2at 2450.303 kb on - strand, within Shewana3_2041at 2450.422 kb on - strandat 2450.473 kb on + strandat 2450.479 kb on - strandat 2450.584 kb on + strandat 2450.584 kb on + strandat 2450.679 kb on + strandat 2450.692 kb on - strand, within Shewana3_2042at 2450.772 kb on + strand, within Shewana3_2042at 2450.782 kb on + strand, within Shewana3_2042at 2450.790 kb on - strand, within Shewana3_2042at 2450.892 kb on - strandat 2450.989 kb on + strand, within Shewana3_2042at 2450.997 kb on - strand, within Shewana3_2042at 2451.089 kb on + strandat 2451.178 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,450,303 - Shewana3_2041 0.45 +0.5
2,450,422 - -0.8
2,450,473 + +0.1
2,450,479 - -0.0
2,450,584 + +1.1
2,450,584 + +0.5
2,450,679 + -0.3
2,450,692 - Shewana3_2042 0.12 +0.4
2,450,772 + Shewana3_2042 0.29 +0.7
2,450,782 + Shewana3_2042 0.31 +1.3
2,450,790 - Shewana3_2042 0.33 -0.2
2,450,892 - +0.0
2,450,989 + Shewana3_2042 0.74 -0.7
2,450,997 - Shewana3_2042 0.76 +0.5
2,451,089 + +0.1
2,451,178 + +2.3

Or see this region's nucleotide sequence