Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2040 and Shewana3_2041 are separated by 9 nucleotides Shewana3_2041 and Shewana3_2042 are separated by 221 nucleotides Shewana3_2042 and Shewana3_2043 are separated by 155 nucleotides
Shewana3_2040: Shewana3_2040 - riboflavin synthase subunit alpha (RefSeq), at 2,449,582 to 2,450,202
_2040
Shewana3_2041: Shewana3_2041 - hypothetical protein (RefSeq), at 2,450,212 to 2,450,412
_2041
Shewana3_2042: Shewana3_2042 - no description, at 2,450,634 to 2,451,113
_2042
Shewana3_2043: Shewana3_2043 - threonyl-tRNA synthetase (RefSeq), at 2,451,269 to 2,453,197
_2043
Position (kb)
2450
2451
2452 Strain fitness (log2 ratio)
-1
0
1
2 at 2449.649 kb on + strand, within Shewana3_2040 at 2449.780 kb on + strand, within Shewana3_2040 at 2449.788 kb on - strand, within Shewana3_2040 at 2449.821 kb on - strand, within Shewana3_2040 at 2449.896 kb on - strand, within Shewana3_2040 at 2449.973 kb on + strand, within Shewana3_2040 at 2450.095 kb on - strand, within Shewana3_2040 at 2450.303 kb on - strand, within Shewana3_2041 at 2450.422 kb on - strand at 2450.473 kb on + strand at 2450.479 kb on - strand at 2450.584 kb on + strand at 2450.584 kb on + strand at 2450.679 kb on + strand at 2450.692 kb on - strand, within Shewana3_2042 at 2450.772 kb on + strand, within Shewana3_2042 at 2450.782 kb on + strand, within Shewana3_2042 at 2450.790 kb on - strand, within Shewana3_2042 at 2450.892 kb on - strand at 2450.989 kb on + strand, within Shewana3_2042 at 2450.997 kb on - strand, within Shewana3_2042 at 2451.089 kb on + strand at 2451.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 2,449,649 + Shewana3_2040 0.11 +0.4 2,449,780 + Shewana3_2040 0.32 -0.7 2,449,788 - Shewana3_2040 0.33 -1.1 2,449,821 - Shewana3_2040 0.38 -1.1 2,449,896 - Shewana3_2040 0.51 +1.0 2,449,973 + Shewana3_2040 0.63 +0.2 2,450,095 - Shewana3_2040 0.83 +0.7 2,450,303 - Shewana3_2041 0.45 +0.5 2,450,422 - -0.8 2,450,473 + +0.1 2,450,479 - -0.0 2,450,584 + +1.1 2,450,584 + +0.5 2,450,679 + -0.3 2,450,692 - Shewana3_2042 0.12 +0.4 2,450,772 + Shewana3_2042 0.29 +0.7 2,450,782 + Shewana3_2042 0.31 +1.3 2,450,790 - Shewana3_2042 0.33 -0.2 2,450,892 - +0.0 2,450,989 + Shewana3_2042 0.74 -0.7 2,450,997 - Shewana3_2042 0.76 +0.5 2,451,089 + +0.1 2,451,178 + +2.3
Or see this region's nucleotide sequence