Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2041

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2039 and Shewana3_2040 are separated by 33 nucleotidesShewana3_2040 and Shewana3_2041 are separated by 9 nucleotidesShewana3_2041 and Shewana3_2042 are separated by 221 nucleotidesShewana3_2042 and Shewana3_2043 are separated by 155 nucleotides Shewana3_2039: Shewana3_2039 - MATE efflux family protein (RefSeq), at 2,448,169 to 2,449,548 _2039 Shewana3_2040: Shewana3_2040 - riboflavin synthase subunit alpha (RefSeq), at 2,449,582 to 2,450,202 _2040 Shewana3_2041: Shewana3_2041 - hypothetical protein (RefSeq), at 2,450,212 to 2,450,412 _2041 Shewana3_2042: Shewana3_2042 - no description, at 2,450,634 to 2,451,113 _2042 Shewana3_2043: Shewana3_2043 - threonyl-tRNA synthetase (RefSeq), at 2,451,269 to 2,453,197 _2043 Position (kb) 2450 2451Strain fitness (log2 ratio) -1 0 1 2at 2449.422 kb on + strandat 2449.430 kb on - strandat 2449.607 kb on + strandat 2449.649 kb on + strand, within Shewana3_2040at 2449.780 kb on + strand, within Shewana3_2040at 2449.788 kb on - strand, within Shewana3_2040at 2449.821 kb on - strand, within Shewana3_2040at 2449.896 kb on - strand, within Shewana3_2040at 2449.973 kb on + strand, within Shewana3_2040at 2450.095 kb on - strand, within Shewana3_2040at 2450.303 kb on - strand, within Shewana3_2041at 2450.422 kb on - strandat 2450.473 kb on + strandat 2450.479 kb on - strandat 2450.584 kb on + strandat 2450.584 kb on + strandat 2450.679 kb on + strandat 2450.692 kb on - strand, within Shewana3_2042at 2450.772 kb on + strand, within Shewana3_2042at 2450.782 kb on + strand, within Shewana3_2042at 2450.790 kb on - strand, within Shewana3_2042at 2450.892 kb on - strandat 2450.989 kb on + strand, within Shewana3_2042at 2450.997 kb on - strand, within Shewana3_2042at 2451.089 kb on + strandat 2451.178 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,449,422 + -0.0
2,449,430 - -0.9
2,449,607 + +0.5
2,449,649 + Shewana3_2040 0.11 +0.4
2,449,780 + Shewana3_2040 0.32 -0.7
2,449,788 - Shewana3_2040 0.33 -1.1
2,449,821 - Shewana3_2040 0.38 -1.1
2,449,896 - Shewana3_2040 0.51 +1.0
2,449,973 + Shewana3_2040 0.63 +0.2
2,450,095 - Shewana3_2040 0.83 +0.7
2,450,303 - Shewana3_2041 0.45 +0.5
2,450,422 - -0.8
2,450,473 + +0.1
2,450,479 - -0.0
2,450,584 + +1.1
2,450,584 + +0.5
2,450,679 + -0.3
2,450,692 - Shewana3_2042 0.12 +0.4
2,450,772 + Shewana3_2042 0.29 +0.7
2,450,782 + Shewana3_2042 0.31 +1.3
2,450,790 - Shewana3_2042 0.33 -0.2
2,450,892 - +0.0
2,450,989 + Shewana3_2042 0.74 -0.7
2,450,997 - Shewana3_2042 0.76 +0.5
2,451,089 + +0.1
2,451,178 + +2.3

Or see this region's nucleotide sequence