Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1973

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1972 and Shewana3_1973 are separated by 105 nucleotidesShewana3_1973 and Shewana3_1974 are separated by 223 nucleotides Shewana3_1972: Shewana3_1972 - DNA gyrase subunit A (RefSeq), at 2,347,835 to 2,350,591 _1972 Shewana3_1973: Shewana3_1973 - phosphoserine aminotransferase (RefSeq), at 2,350,697 to 2,351,788 _1973 Shewana3_1974: Shewana3_1974 - aromatic amino acid aminotransferase (RefSeq), at 2,352,012 to 2,353,202 _1974 Position (kb) 2350 2351 2352Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2350.498 kb on + strandat 2350.564 kb on + strandat 2352.103 kb on - strandat 2352.361 kb on - strand, within Shewana3_1974at 2352.475 kb on + strand, within Shewana3_1974at 2352.483 kb on - strand, within Shewana3_1974at 2352.490 kb on + strand, within Shewana3_1974at 2352.589 kb on - strand, within Shewana3_1974

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,350,498 + -4.1
2,350,564 + -2.5
2,352,103 - -1.8
2,352,361 - Shewana3_1974 0.29 -5.9
2,352,475 + Shewana3_1974 0.39 -2.1
2,352,483 - Shewana3_1974 0.40 -4.0
2,352,490 + Shewana3_1974 0.40 -3.4
2,352,589 - Shewana3_1974 0.48 -4.9

Or see this region's nucleotide sequence