Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1972

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1971 and Shewana3_1972 are separated by 385 nucleotidesShewana3_1972 and Shewana3_1973 are separated by 105 nucleotides Shewana3_1971: Shewana3_1971 - 3-demethylubiquinone-9 3-methyltransferase (RefSeq), at 2,346,739 to 2,347,449 _1971 Shewana3_1972: Shewana3_1972 - DNA gyrase subunit A (RefSeq), at 2,347,835 to 2,350,591 _1972 Shewana3_1973: Shewana3_1973 - phosphoserine aminotransferase (RefSeq), at 2,350,697 to 2,351,788 _1973 Position (kb) 2347 2348 2349 2350 2351Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2347.511 kb on + strandat 2347.522 kb on + strandat 2347.530 kb on - strandat 2347.722 kb on + strandat 2347.727 kb on + strandat 2347.735 kb on - strandat 2350.498 kb on + strandat 2350.564 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,347,511 + +0.7
2,347,522 + -0.8
2,347,530 - +0.0
2,347,722 + -1.3
2,347,727 + -0.5
2,347,735 - -0.2
2,350,498 + -4.1
2,350,564 + -2.5

Or see this region's nucleotide sequence