Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1755

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1753 and infA are separated by 103 nucleotidesinfA and Shewana3_1755 are separated by 82 nucleotidesShewana3_1755 and aat overlap by 11 nucleotidesaat and Shewana3_1757 are separated by 81 nucleotides Shewana3_1753: Shewana3_1753 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 2,067,010 to 2,069,277 _1753 Shewana3_1754: infA - translation initiation factor IF-1 (RefSeq), at 2,069,381 to 2,069,599 infA Shewana3_1755: Shewana3_1755 - arginyl-tRNA-protein transferase (RefSeq), at 2,069,682 to 2,070,398 _1755 Shewana3_1756: aat - leucyl/phenylalanyl-tRNA--protein transferase (RefSeq), at 2,070,388 to 2,071,098 aat Shewana3_1757: Shewana3_1757 - 17 kDa surface antigen (RefSeq), at 2,071,180 to 2,071,623 _1757 Position (kb) 2069 2070 2071Strain fitness (log2 ratio) -1 0 1at 2068.865 kb on + strand, within Shewana3_1753at 2069.714 kb on - strandat 2069.744 kb on - strandat 2069.846 kb on + strand, within Shewana3_1755at 2069.918 kb on - strand, within Shewana3_1755at 2070.092 kb on + strand, within Shewana3_1755at 2070.092 kb on + strand, within Shewana3_1755at 2070.294 kb on - strand, within Shewana3_1755at 2070.451 kb on - strandat 2070.451 kb on - strandat 2070.463 kb on - strand, within aatat 2070.510 kb on - strand, within aatat 2071.334 kb on + strand, within Shewana3_1757at 2071.398 kb on - strand, within Shewana3_1757

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,068,865 + Shewana3_1753 0.82 -1.7
2,069,714 - -0.8
2,069,744 - +0.0
2,069,846 + Shewana3_1755 0.23 +0.3
2,069,918 - Shewana3_1755 0.33 +0.9
2,070,092 + Shewana3_1755 0.57 -1.0
2,070,092 + Shewana3_1755 0.57 +0.1
2,070,294 - Shewana3_1755 0.85 +0.5
2,070,451 - +0.2
2,070,451 - -1.6
2,070,463 - aat Shewana3_1756 0.11 -0.2
2,070,510 - aat Shewana3_1756 0.17 +0.5
2,071,334 + Shewana3_1757 0.35 +0.3
2,071,398 - Shewana3_1757 0.49 +0.4

Or see this region's nucleotide sequence