Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1716

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1714 and Shewana3_1715 are separated by 31 nucleotidesShewana3_1715 and fur are separated by 93 nucleotidesfur and Shewana3_1717 are separated by 256 nucleotides Shewana3_1714: Shewana3_1714 - GreA/GreB family elongation factor (RefSeq), at 2,019,250 to 2,019,657 _1714 Shewana3_1715: Shewana3_1715 - GCN5-related N-acetyltransferase (RefSeq), at 2,019,689 to 2,020,201 _1715 Shewana3_1716: fur - ferric uptake regulator (RefSeq), at 2,020,295 to 2,020,726 fur Shewana3_1717: Shewana3_1717 - NAD-dependent deacetylase (RefSeq), at 2,020,983 to 2,021,726 _1717 Position (kb) 2020 2021Strain fitness (log2 ratio) -1 0 1at 2019.496 kb on + strand, within Shewana3_1714at 2019.523 kb on + strand, within Shewana3_1714at 2019.665 kb on + strandat 2019.915 kb on - strand, within Shewana3_1715at 2020.143 kb on + strand, within Shewana3_1715at 2020.822 kb on - strandat 2021.392 kb on - strand, within Shewana3_1717at 2021.613 kb on - strand, within Shewana3_1717at 2021.723 kb on - strandat 2021.723 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,019,496 + Shewana3_1714 0.60 -0.4
2,019,523 + Shewana3_1714 0.67 -0.3
2,019,665 + +0.1
2,019,915 - Shewana3_1715 0.44 -0.1
2,020,143 + Shewana3_1715 0.88 +0.4
2,020,822 - -1.4
2,021,392 - Shewana3_1717 0.55 -0.4
2,021,613 - Shewana3_1717 0.85 -0.9
2,021,723 - -0.6
2,021,723 - +0.1

Or see this region's nucleotide sequence