Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1667

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1666 and Shewana3_1667 are separated by 109 nucleotidesShewana3_1667 and Shewana3_1668 are separated by 68 nucleotides Shewana3_1666: Shewana3_1666 - butyryl-CoA:acetate CoA transferase (RefSeq), at 1,957,549 to 1,958,205 _1666 Shewana3_1667: Shewana3_1667 - 3-oxoacid CoA-transferase, A subunit (RefSeq), at 1,958,315 to 1,959,019 _1667 Shewana3_1668: Shewana3_1668 - hydroxymethylglutaryl-CoA lyase (RefSeq), at 1,959,088 to 1,960,020 _1668 Position (kb) 1958 1959 1960Strain fitness (log2 ratio) -1 0 1 2 3 4at 1957.354 kb on + strandat 1957.364 kb on - strandat 1957.380 kb on + strandat 1957.387 kb on + strandat 1957.716 kb on - strand, within Shewana3_1666at 1958.358 kb on + strandat 1959.085 kb on + strandat 1959.093 kb on - strandat 1959.093 kb on - strandat 1959.131 kb on - strandat 1959.669 kb on + strand, within Shewana3_1668at 1959.969 kb on + strandat 1959.969 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,957,354 + -1.3
1,957,364 - -1.2
1,957,380 + +0.5
1,957,387 + +0.6
1,957,716 - Shewana3_1666 0.25 +1.5
1,958,358 + +1.1
1,959,085 + +1.6
1,959,093 - +0.4
1,959,093 - -1.0
1,959,131 - +0.7
1,959,669 + Shewana3_1668 0.62 +2.7
1,959,969 + +3.4
1,959,969 + +4.5

Or see this region's nucleotide sequence