Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1477

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1476 and Shewana3_1477 are separated by 2 nucleotidesShewana3_1477 and Shewana3_1478 are separated by 179 nucleotides Shewana3_1476: Shewana3_1476 - D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (RefSeq), at 1,716,390 to 1,717,520 _1476 Shewana3_1477: Shewana3_1477 - aspartate semialdehyde dehydrogenase (RefSeq), at 1,717,523 to 1,718,539 _1477 Shewana3_1478: Shewana3_1478 - hypothetical protein (RefSeq), at 1,718,719 to 1,722,066 _1478 Position (kb) 1717 1718 1719Strain fitness (log2 ratio) -3 -2 -1 0 1at 1717.192 kb on + strand, within Shewana3_1476at 1718.880 kb on + strandat 1719.028 kb on - strandat 1719.028 kb on - strandat 1719.204 kb on + strand, within Shewana3_1478at 1719.212 kb on - strand, within Shewana3_1478at 1719.228 kb on + strand, within Shewana3_1478at 1719.240 kb on + strand, within Shewana3_1478at 1719.338 kb on - strand, within Shewana3_1478at 1719.478 kb on + strand, within Shewana3_1478at 1719.515 kb on - strand, within Shewana3_1478

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,717,192 + Shewana3_1476 0.71 -1.6
1,718,880 + +0.6
1,719,028 - +1.6
1,719,028 - +0.1
1,719,204 + Shewana3_1478 0.14 -3.2
1,719,212 - Shewana3_1478 0.15 +0.6
1,719,228 + Shewana3_1478 0.15 +0.9
1,719,240 + Shewana3_1478 0.16 +0.8
1,719,338 - Shewana3_1478 0.18 +0.1
1,719,478 + Shewana3_1478 0.23 +0.5
1,719,515 - Shewana3_1478 0.24 +0.4

Or see this region's nucleotide sequence