Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0057

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1417 and Shewana3_R0054 are separated by 143 nucleotidesShewana3_R0054 and Shewana3_R0055 are separated by 25 nucleotidesShewana3_R0055 and Shewana3_R0056 are separated by 25 nucleotidesShewana3_R0056 and Shewana3_R0057 are separated by 41 nucleotidesShewana3_R0057 and Shewana3_R0058 are separated by 32 nucleotidesShewana3_R0058 and Shewana3_R0059 are separated by 48 nucleotidesShewana3_R0059 and gltX are separated by 588 nucleotides Shewana3_1417: Shewana3_1417 - hypothetical protein (RefSeq), at 1,642,249 to 1,642,479 _1417 Shewana3_R0054: Shewana3_R0054 - tRNA-Val (RefSeq), at 1,642,623 to 1,642,698 _R0054 Shewana3_R0055: Shewana3_R0055 - tRNA-Val (RefSeq), at 1,642,724 to 1,642,799 _R0055 Shewana3_R0056: Shewana3_R0056 - tRNA-Val (RefSeq), at 1,642,825 to 1,642,900 _R0056 Shewana3_R0057: Shewana3_R0057 - tRNA-Val (RefSeq), at 1,642,942 to 1,643,017 _R0057 Shewana3_R0058: Shewana3_R0058 - tRNA-Val (RefSeq), at 1,643,050 to 1,643,125 _R0058 Shewana3_R0059: Shewana3_R0059 - tRNA-Val (RefSeq), at 1,643,174 to 1,643,249 _R0059 Shewana3_1418: gltX - glutamyl-tRNA synthetase (RefSeq), at 1,643,838 to 1,645,247 gltX Position (kb) 1642 1643 1644Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1641.964 kb on + strandat 1641.972 kb on - strandat 1642.233 kb on - strandat 1642.414 kb on + strand, within Shewana3_1417at 1642.507 kb on - strandat 1643.424 kb on - strandat 1643.538 kb on - strandat 1643.697 kb on + strandat 1643.697 kb on + strandat 1643.697 kb on + strandat 1643.698 kb on - strandat 1643.705 kb on - strandat 1643.705 kb on - strandat 1643.715 kb on - strandat 1643.758 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,641,964 + -0.3
1,641,972 - -0.6
1,642,233 - -0.4
1,642,414 + Shewana3_1417 0.71 +1.2
1,642,507 - +1.2
1,643,424 - -1.1
1,643,538 - -0.5
1,643,697 + +0.2
1,643,697 + +0.7
1,643,697 + -1.9
1,643,698 - -0.2
1,643,705 - +0.4
1,643,705 - +0.4
1,643,715 - +0.3
1,643,758 + +3.0

Or see this region's nucleotide sequence