Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1397 and Shewana3_1398 are separated by 263 nucleotides Shewana3_1398 and Shewana3_1399 are separated by 198 nucleotides Shewana3_1399 and Shewana3_1400 are separated by 0 nucleotides
Shewana3_1397: Shewana3_1397 - patatin (RefSeq), at 1,612,213 to 1,613,337
_1397
Shewana3_1398: Shewana3_1398 - prolyl-tRNA synthetase (RefSeq), at 1,613,601 to 1,615,313
_1398
Shewana3_1399: Shewana3_1399 - hexapaptide repeat-containing transferase (RefSeq), at 1,615,512 to 1,616,141
_1399
Shewana3_1400: Shewana3_1400 - hypothetical protein (RefSeq), at 1,616,142 to 1,616,876
_1400
Position (kb) 1613
1614
1615
1616 Strain fitness (log2 ratio) -1
0
1
2 at 1613.050 kb on - strand, within Shewana3_1397 at 1613.232 kb on + strand at 1613.240 kb on - strand at 1613.314 kb on + strand at 1613.322 kb on - strand at 1613.595 kb on - strand at 1615.531 kb on + strand at 1615.599 kb on - strand, within Shewana3_1399 at 1615.687 kb on + strand, within Shewana3_1399 at 1615.701 kb on - strand, within Shewana3_1399 at 1615.771 kb on - strand, within Shewana3_1399 at 1616.074 kb on + strand, within Shewana3_1399
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,613,050 - Shewana3_1397 0.74 -0.5 1,613,232 + +0.6 1,613,240 - -0.8 1,613,314 + +0.6 1,613,322 - +0.1 1,613,595 - +1.9 1,615,531 + +0.7 1,615,599 - Shewana3_1399 0.14 -0.9 1,615,687 + Shewana3_1399 0.28 +1.5 1,615,701 - Shewana3_1399 0.30 +0.4 1,615,771 - Shewana3_1399 0.41 +0.9 1,616,074 + Shewana3_1399 0.89 +0.7
Or see this region's nucleotide sequence