Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1371

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1370 and Shewana3_1371 are separated by 221 nucleotidesShewana3_1371 and Shewana3_1372 are separated by 122 nucleotides Shewana3_1370: Shewana3_1370 - hypothetical protein (RefSeq), at 1,581,349 to 1,583,400 _1370 Shewana3_1371: Shewana3_1371 - VacJ family lipoprotein (RefSeq), at 1,583,622 to 1,584,407 _1371 Shewana3_1372: Shewana3_1372 - response regulator receiver protein (RefSeq), at 1,584,530 to 1,585,633 _1372 Position (kb) 1583 1584 1585Strain fitness (log2 ratio) -2 -1 0 1at 1582.646 kb on + strand, within Shewana3_1370at 1582.750 kb on + strand, within Shewana3_1370at 1582.923 kb on - strand, within Shewana3_1370at 1582.925 kb on + strand, within Shewana3_1370at 1582.933 kb on - strand, within Shewana3_1370at 1583.039 kb on + strand, within Shewana3_1370at 1583.118 kb on + strand, within Shewana3_1370at 1583.118 kb on + strand, within Shewana3_1370at 1583.126 kb on - strand, within Shewana3_1370at 1583.126 kb on - strand, within Shewana3_1370at 1583.126 kb on - strand, within Shewana3_1370at 1583.260 kb on + strandat 1583.530 kb on - strandat 1583.584 kb on + strandat 1583.594 kb on + strandat 1583.675 kb on + strandat 1583.680 kb on + strandat 1583.688 kb on - strandat 1583.714 kb on + strand, within Shewana3_1371at 1583.714 kb on + strand, within Shewana3_1371at 1584.066 kb on + strand, within Shewana3_1371at 1584.066 kb on + strand, within Shewana3_1371at 1584.122 kb on + strand, within Shewana3_1371at 1584.192 kb on + strand, within Shewana3_1371at 1584.285 kb on + strand, within Shewana3_1371at 1584.287 kb on + strand, within Shewana3_1371at 1584.392 kb on + strandat 1584.419 kb on + strandat 1584.738 kb on - strand, within Shewana3_1372at 1584.974 kb on - strand, within Shewana3_1372at 1585.058 kb on + strand, within Shewana3_1372at 1585.106 kb on - strand, within Shewana3_1372at 1585.113 kb on + strand, within Shewana3_1372at 1585.117 kb on + strand, within Shewana3_1372at 1585.141 kb on + strand, within Shewana3_1372at 1585.156 kb on - strand, within Shewana3_1372at 1585.227 kb on - strand, within Shewana3_1372at 1585.365 kb on - strand, within Shewana3_1372

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
1,582,646 + Shewana3_1370 0.63 +0.6
1,582,750 + Shewana3_1370 0.68 +0.4
1,582,923 - Shewana3_1370 0.77 -0.1
1,582,925 + Shewana3_1370 0.77 +0.4
1,582,933 - Shewana3_1370 0.77 -0.2
1,583,039 + Shewana3_1370 0.82 +0.5
1,583,118 + Shewana3_1370 0.86 +0.6
1,583,118 + Shewana3_1370 0.86 +1.0
1,583,126 - Shewana3_1370 0.87 -1.3
1,583,126 - Shewana3_1370 0.87 +0.4
1,583,126 - Shewana3_1370 0.87 +0.6
1,583,260 + +0.5
1,583,530 - -1.2
1,583,584 + +1.0
1,583,594 + -0.5
1,583,675 + -2.7
1,583,680 + -2.4
1,583,688 - -0.3
1,583,714 + Shewana3_1371 0.12 -2.1
1,583,714 + Shewana3_1371 0.12 -1.3
1,584,066 + Shewana3_1371 0.56 -1.1
1,584,066 + Shewana3_1371 0.56 -1.2
1,584,122 + Shewana3_1371 0.64 -1.2
1,584,192 + Shewana3_1371 0.73 -0.7
1,584,285 + Shewana3_1371 0.84 -1.1
1,584,287 + Shewana3_1371 0.85 -0.4
1,584,392 + -1.3
1,584,419 + +0.0
1,584,738 - Shewana3_1372 0.19 -2.2
1,584,974 - Shewana3_1372 0.40 +0.3
1,585,058 + Shewana3_1372 0.48 +0.3
1,585,106 - Shewana3_1372 0.52 +0.6
1,585,113 + Shewana3_1372 0.53 +0.4
1,585,117 + Shewana3_1372 0.53 -0.2
1,585,141 + Shewana3_1372 0.55 +0.8
1,585,156 - Shewana3_1372 0.57 +0.6
1,585,227 - Shewana3_1372 0.63 -0.8
1,585,365 - Shewana3_1372 0.76 +0.3

Or see this region's nucleotide sequence