Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1370 and Shewana3_1371 are separated by 221 nucleotides Shewana3_1371 and Shewana3_1372 are separated by 122 nucleotides
Shewana3_1370: Shewana3_1370 - hypothetical protein (RefSeq), at 1,581,349 to 1,583,400
_1370
Shewana3_1371: Shewana3_1371 - VacJ family lipoprotein (RefSeq), at 1,583,622 to 1,584,407
_1371
Shewana3_1372: Shewana3_1372 - response regulator receiver protein (RefSeq), at 1,584,530 to 1,585,633
_1372
Position (kb)
1583
1584
1585 Strain fitness (log2 ratio)
-2
-1
0
1 at 1582.646 kb on + strand, within Shewana3_1370 at 1582.750 kb on + strand, within Shewana3_1370 at 1582.923 kb on - strand, within Shewana3_1370 at 1582.925 kb on + strand, within Shewana3_1370 at 1582.933 kb on - strand, within Shewana3_1370 at 1583.039 kb on + strand, within Shewana3_1370 at 1583.118 kb on + strand, within Shewana3_1370 at 1583.118 kb on + strand, within Shewana3_1370 at 1583.126 kb on - strand, within Shewana3_1370 at 1583.126 kb on - strand, within Shewana3_1370 at 1583.126 kb on - strand, within Shewana3_1370 at 1583.260 kb on + strand at 1583.530 kb on - strand at 1583.584 kb on + strand at 1583.594 kb on + strand at 1583.675 kb on + strand at 1583.680 kb on + strand at 1583.688 kb on - strand at 1583.714 kb on + strand, within Shewana3_1371 at 1583.714 kb on + strand, within Shewana3_1371 at 1584.066 kb on + strand, within Shewana3_1371 at 1584.066 kb on + strand, within Shewana3_1371 at 1584.122 kb on + strand, within Shewana3_1371 at 1584.192 kb on + strand, within Shewana3_1371 at 1584.285 kb on + strand, within Shewana3_1371 at 1584.287 kb on + strand, within Shewana3_1371 at 1584.392 kb on + strand at 1584.419 kb on + strand at 1584.738 kb on - strand, within Shewana3_1372 at 1584.974 kb on - strand, within Shewana3_1372 at 1585.058 kb on + strand, within Shewana3_1372 at 1585.106 kb on - strand, within Shewana3_1372 at 1585.113 kb on + strand, within Shewana3_1372 at 1585.117 kb on + strand, within Shewana3_1372 at 1585.141 kb on + strand, within Shewana3_1372 at 1585.156 kb on - strand, within Shewana3_1372 at 1585.227 kb on - strand, within Shewana3_1372 at 1585.365 kb on - strand, within Shewana3_1372
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,582,646 + Shewana3_1370 0.63 +0.6 1,582,750 + Shewana3_1370 0.68 +0.4 1,582,923 - Shewana3_1370 0.77 -0.1 1,582,925 + Shewana3_1370 0.77 +0.4 1,582,933 - Shewana3_1370 0.77 -0.2 1,583,039 + Shewana3_1370 0.82 +0.5 1,583,118 + Shewana3_1370 0.86 +0.6 1,583,118 + Shewana3_1370 0.86 +1.0 1,583,126 - Shewana3_1370 0.87 -1.3 1,583,126 - Shewana3_1370 0.87 +0.4 1,583,126 - Shewana3_1370 0.87 +0.6 1,583,260 + +0.5 1,583,530 - -1.2 1,583,584 + +1.0 1,583,594 + -0.5 1,583,675 + -2.7 1,583,680 + -2.4 1,583,688 - -0.3 1,583,714 + Shewana3_1371 0.12 -2.1 1,583,714 + Shewana3_1371 0.12 -1.3 1,584,066 + Shewana3_1371 0.56 -1.1 1,584,066 + Shewana3_1371 0.56 -1.2 1,584,122 + Shewana3_1371 0.64 -1.2 1,584,192 + Shewana3_1371 0.73 -0.7 1,584,285 + Shewana3_1371 0.84 -1.1 1,584,287 + Shewana3_1371 0.85 -0.4 1,584,392 + -1.3 1,584,419 + +0.0 1,584,738 - Shewana3_1372 0.19 -2.2 1,584,974 - Shewana3_1372 0.40 +0.3 1,585,058 + Shewana3_1372 0.48 +0.3 1,585,106 - Shewana3_1372 0.52 +0.6 1,585,113 + Shewana3_1372 0.53 +0.4 1,585,117 + Shewana3_1372 0.53 -0.2 1,585,141 + Shewana3_1372 0.55 +0.8 1,585,156 - Shewana3_1372 0.57 +0.6 1,585,227 - Shewana3_1372 0.63 -0.8 1,585,365 - Shewana3_1372 0.76 +0.3
Or see this region's nucleotide sequence