Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1184

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrmB and Shewana3_1183 are separated by 45 nucleotidesShewana3_1183 and Shewana3_1184 overlap by 1 nucleotidesShewana3_1184 and Shewana3_1185 are separated by 178 nucleotides Shewana3_1182: trmB - tRNA (guanine-N(7)-)-methyltransferase (RefSeq), at 1,389,839 to 1,390,555 trmB Shewana3_1183: Shewana3_1183 - hypothetical protein (RefSeq), at 1,390,601 to 1,390,927 _1183 Shewana3_1184: Shewana3_1184 - Glutaminase (EC 3.5.1.2) (from data), at 1,390,927 to 1,391,841 _1184 Shewana3_1185: Shewana3_1185 - hypothetical protein (RefSeq), at 1,392,020 to 1,392,841 _1185 Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -1 0 1at 1389.960 kb on + strand, within trmBat 1390.008 kb on + strand, within trmBat 1391.340 kb on + strand, within Shewana3_1184at 1391.348 kb on - strand, within Shewana3_1184at 1391.401 kb on + strand, within Shewana3_1184at 1391.409 kb on + strand, within Shewana3_1184at 1391.482 kb on - strand, within Shewana3_1184at 1391.547 kb on + strand, within Shewana3_1184at 1391.598 kb on + strand, within Shewana3_1184at 1391.731 kb on - strand, within Shewana3_1184at 1391.744 kb on + strand, within Shewana3_1184at 1391.752 kb on - strandat 1391.961 kb on - strandat 1392.009 kb on - strandat 1392.035 kb on + strandat 1392.197 kb on + strand, within Shewana3_1185at 1392.238 kb on - strand, within Shewana3_1185at 1392.352 kb on + strand, within Shewana3_1185at 1392.464 kb on - strand, within Shewana3_1185at 1392.626 kb on + strand, within Shewana3_1185

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,389,960 + trmB Shewana3_1182 0.17 +0.5
1,390,008 + trmB Shewana3_1182 0.24 -0.6
1,391,340 + Shewana3_1184 0.45 -0.8
1,391,348 - Shewana3_1184 0.46 +1.2
1,391,401 + Shewana3_1184 0.52 +0.9
1,391,409 + Shewana3_1184 0.53 +0.6
1,391,482 - Shewana3_1184 0.61 +1.1
1,391,547 + Shewana3_1184 0.68 -0.5
1,391,598 + Shewana3_1184 0.73 +0.9
1,391,731 - Shewana3_1184 0.88 -0.2
1,391,744 + Shewana3_1184 0.89 +0.5
1,391,752 - +1.6
1,391,961 - -0.0
1,392,009 - +0.1
1,392,035 + +0.8
1,392,197 + Shewana3_1185 0.22 +0.5
1,392,238 - Shewana3_1185 0.27 +0.2
1,392,352 + Shewana3_1185 0.40 -1.6
1,392,464 - Shewana3_1185 0.54 -0.2
1,392,626 + Shewana3_1185 0.74 +0.5

Or see this region's nucleotide sequence