Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1131

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0044 and Shewana3_R0045 are separated by 43 nucleotidesShewana3_R0045 and Shewana3_R0046 are separated by 44 nucleotidesShewana3_R0046 and Shewana3_R0047 are separated by 36 nucleotidesShewana3_R0047 and Shewana3_R0048 are separated by 94 nucleotidesShewana3_R0048 and valS are separated by 406 nucleotidesvalS and Shewana3_1132 are separated by 15 nucleotides Shewana3_R0044: Shewana3_R0044 - tRNA-Arg (RefSeq), at 1,333,015 to 1,333,091 _R0044 Shewana3_R0045: Shewana3_R0045 - tRNA-Arg (RefSeq), at 1,333,135 to 1,333,211 _R0045 Shewana3_R0046: Shewana3_R0046 - tRNA-Arg (RefSeq), at 1,333,256 to 1,333,332 _R0046 Shewana3_R0047: Shewana3_R0047 - tRNA-Ser (RefSeq), at 1,333,369 to 1,333,460 _R0047 Shewana3_R0048: Shewana3_R0048 - tRNA-Arg (RefSeq), at 1,333,555 to 1,333,631 _R0048 Shewana3_1131: valS - valyl-tRNA synthetase (RefSeq), at 1,334,038 to 1,336,914 valS Shewana3_1132: Shewana3_1132 - DNA polymerase III chi subunit, HolC (RefSeq), at 1,336,930 to 1,337,394 _1132 Position (kb) 1334 1335 1336 1337Strain fitness (log2 ratio) -1 0 1 2 3 4at 1333.713 kb on + strandat 1333.853 kb on + strandat 1333.901 kb on + strandat 1333.957 kb on + strandat 1333.957 kb on + strandat 1334.036 kb on - strandat 1334.050 kb on - strandat 1337.372 kb on + strandat 1337.380 kb on - strandat 1337.409 kb on + strandat 1337.520 kb on - strandat 1337.528 kb on + strandat 1337.537 kb on - strandat 1337.564 kb on - strandat 1337.601 kb on + strandat 1337.630 kb on - strandat 1337.632 kb on + strandat 1337.855 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,333,713 + -0.8
1,333,853 + -0.8
1,333,901 + +0.5
1,333,957 + -1.4
1,333,957 + +1.2
1,334,036 - +4.1
1,334,050 - +0.7
1,337,372 + +1.9
1,337,380 - -1.5
1,337,409 + +2.1
1,337,520 - +0.7
1,337,528 + +0.0
1,337,537 - -0.9
1,337,564 - +0.5
1,337,601 + +0.3
1,337,630 - +0.3
1,337,632 + +0.6
1,337,855 + +0.1

Or see this region's nucleotide sequence