Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1129

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntalaS and Shewana3_1129 are separated by 9 nucleotidesShewana3_1129 and Shewana3_1130 are separated by 118 nucleotidesShewana3_1130 and Shewana3_R0041 are separated by 203 nucleotidesShewana3_R0041 and Shewana3_R0042 are separated by 18 nucleotidesShewana3_R0042 and Shewana3_R0043 are separated by 28 nucleotidesShewana3_R0043 and Shewana3_R0044 are separated by 82 nucleotides Shewana3_1128: alaS - alanyl-tRNA synthetase (RefSeq), at 1,328,231 to 1,330,855 alaS Shewana3_1129: Shewana3_1129 - aspartate kinase (RefSeq), at 1,330,865 to 1,332,121 _1129 Shewana3_1130: Shewana3_1130 - carbon storage regulator (RefSeq), at 1,332,240 to 1,332,437 _1130 Shewana3_R0041: Shewana3_R0041 - tRNA-Ser (RefSeq), at 1,332,641 to 1,332,732 _R0041 Shewana3_R0042: Shewana3_R0042 - tRNA-Arg (RefSeq), at 1,332,751 to 1,332,827 _R0042 Shewana3_R0043: Shewana3_R0043 - tRNA-Arg (RefSeq), at 1,332,856 to 1,332,932 _R0043 Shewana3_R0044: Shewana3_R0044 - tRNA-Arg (RefSeq), at 1,333,015 to 1,333,091 _R0044 Position (kb) 1330 1331 1332 1333Strain fitness (log2 ratio) -1 0 1at 1332.123 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
1,332,123 - +0.3

Or see this region's nucleotide sequence