Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1101

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntribH and nusB are separated by 14 nucleotidesnusB and Shewana3_1101 are separated by 78 nucleotidesShewana3_1101 and Shewana3_1102 overlap by 1 nucleotidesShewana3_1102 and Shewana3_1103 are separated by 70 nucleotides Shewana3_1099: ribH - 6,7-dimethyl-8-ribityllumazine synthase (RefSeq), at 1,293,461 to 1,294,003 ribH Shewana3_1100: nusB - transcription antitermination protein NusB (RefSeq), at 1,294,018 to 1,294,422 nusB Shewana3_1101: Shewana3_1101 - thiamine-monophosphate kinase (RefSeq), at 1,294,501 to 1,295,457 _1101 Shewana3_1102: Shewana3_1102 - phosphatidylglycerophosphatase (RefSeq), at 1,295,457 to 1,295,951 _1102 Shewana3_1103: Shewana3_1103 - hypothetical protein (RefSeq), at 1,296,022 to 1,296,897 _1103 Position (kb) 1294 1295 1296Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1294.491 kb on + strandat 1296.057 kb on - strandat 1296.117 kb on - strand, within Shewana3_1103at 1296.159 kb on + strand, within Shewana3_1103at 1296.303 kb on + strand, within Shewana3_1103at 1296.371 kb on + strand, within Shewana3_1103at 1296.436 kb on + strand, within Shewana3_1103at 1296.441 kb on + strand, within Shewana3_1103at 1296.441 kb on + strand, within Shewana3_1103at 1296.449 kb on - strand, within Shewana3_1103

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,294,491 + +0.4
1,296,057 - -0.3
1,296,117 - Shewana3_1103 0.11 +1.1
1,296,159 + Shewana3_1103 0.16 +0.3
1,296,303 + Shewana3_1103 0.32 +0.7
1,296,371 + Shewana3_1103 0.40 +1.9
1,296,436 + Shewana3_1103 0.47 +0.6
1,296,441 + Shewana3_1103 0.48 -0.8
1,296,441 + Shewana3_1103 0.48 -1.1
1,296,449 - Shewana3_1103 0.49 -3.3

Or see this region's nucleotide sequence