Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0713

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0712 and Shewana3_0713 are separated by 125 nucleotidesShewana3_0713 and alr are separated by 75 nucleotides Shewana3_0712: Shewana3_0712 - dipeptidyl-peptidase 7 (RefSeq), at 827,230 to 829,428 _0712 Shewana3_0713: Shewana3_0713 - primary replicative DNA helicase (RefSeq), at 829,554 to 830,960 _0713 Shewana3_0714: alr - alanine racemase (RefSeq), at 831,036 to 832,112 alr Position (kb) 829 830 831Strain fitness (log2 ratio) -2 -1 0 1at 828.623 kb on - strand, within Shewana3_0712at 828.638 kb on + strand, within Shewana3_0712at 828.878 kb on - strand, within Shewana3_0712at 828.980 kb on - strand, within Shewana3_0712at 829.083 kb on + strand, within Shewana3_0712at 829.210 kb on + strandat 829.393 kb on + strandat 829.398 kb on + strandat 830.945 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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828,623 - Shewana3_0712 0.63 +1.0
828,638 + Shewana3_0712 0.64 -0.1
828,878 - Shewana3_0712 0.75 +0.2
828,980 - Shewana3_0712 0.80 -2.0
829,083 + Shewana3_0712 0.84 +0.7
829,210 + -0.2
829,393 + +0.2
829,398 + +0.4
830,945 + -0.4

Or see this region's nucleotide sequence