Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0659 and Shewana3_0660 are separated by 205 nucleotides Shewana3_0660 and Shewana3_0661 are separated by 34 nucleotides Shewana3_0661 and Shewana3_0662 are separated by 159 nucleotides
Shewana3_0659: Shewana3_0659 - diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq), at 779,893 to 781,833
_0659
Shewana3_0660: Shewana3_0660 - hypothetical protein (RefSeq), at 782,039 to 782,809
_0660
Shewana3_0661: Shewana3_0661 - hypothetical protein (RefSeq), at 782,844 to 783,428
_0661
Shewana3_0662: Shewana3_0662 - hypothetical protein (RefSeq), at 783,588 to 783,935
_0662
Position (kb) 782
783 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 781.134 kb on - strand, within Shewana3_0659 at 781.203 kb on + strand, within Shewana3_0659 at 781.259 kb on - strand, within Shewana3_0659 at 781.398 kb on + strand, within Shewana3_0659 at 781.406 kb on - strand, within Shewana3_0659 at 781.524 kb on - strand, within Shewana3_0659 at 781.539 kb on + strand, within Shewana3_0659 at 781.578 kb on - strand, within Shewana3_0659 at 781.705 kb on + strand at 781.718 kb on - strand at 781.870 kb on + strand at 781.884 kb on - strand at 782.053 kb on - strand at 782.132 kb on + strand, within Shewana3_0660 at 782.187 kb on + strand, within Shewana3_0660 at 782.202 kb on - strand, within Shewana3_0660 at 782.284 kb on - strand, within Shewana3_0660 at 782.294 kb on + strand, within Shewana3_0660 at 782.294 kb on + strand, within Shewana3_0660 at 782.294 kb on + strand, within Shewana3_0660 at 782.368 kb on - strand, within Shewana3_0660 at 782.368 kb on - strand, within Shewana3_0660 at 782.368 kb on - strand, within Shewana3_0660 at 782.369 kb on + strand, within Shewana3_0660 at 782.397 kb on + strand, within Shewana3_0660 at 782.582 kb on + strand, within Shewana3_0660 at 782.623 kb on + strand, within Shewana3_0660 at 782.633 kb on + strand, within Shewana3_0660 at 782.752 kb on + strand at 782.784 kb on + strand at 782.836 kb on - strand at 782.865 kb on + strand at 782.891 kb on - strand at 783.109 kb on + strand, within Shewana3_0661 at 783.162 kb on + strand, within Shewana3_0661 at 783.340 kb on - strand, within Shewana3_0661 at 783.352 kb on - strand, within Shewana3_0661 at 783.385 kb on - strand at 783.534 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 781,134 - Shewana3_0659 0.64 +0.2 781,203 + Shewana3_0659 0.67 +0.1 781,259 - Shewana3_0659 0.70 +0.2 781,398 + Shewana3_0659 0.78 +0.5 781,406 - Shewana3_0659 0.78 -2.4 781,524 - Shewana3_0659 0.84 +0.6 781,539 + Shewana3_0659 0.85 -0.6 781,578 - Shewana3_0659 0.87 -0.7 781,705 + +0.4 781,718 - +0.9 781,870 + +0.5 781,884 - -0.8 782,053 - -0.7 782,132 + Shewana3_0660 0.12 +0.2 782,187 + Shewana3_0660 0.19 +0.3 782,202 - Shewana3_0660 0.21 -2.1 782,284 - Shewana3_0660 0.32 -0.5 782,294 + Shewana3_0660 0.33 -0.6 782,294 + Shewana3_0660 0.33 +0.7 782,294 + Shewana3_0660 0.33 -1.3 782,368 - Shewana3_0660 0.43 +0.1 782,368 - Shewana3_0660 0.43 -4.1 782,368 - Shewana3_0660 0.43 +0.6 782,369 + Shewana3_0660 0.43 +0.5 782,397 + Shewana3_0660 0.46 -0.5 782,582 + Shewana3_0660 0.70 +0.4 782,623 + Shewana3_0660 0.76 +0.6 782,633 + Shewana3_0660 0.77 -1.5 782,752 + +0.4 782,784 + +0.7 782,836 - +0.8 782,865 + +0.3 782,891 - +0.6 783,109 + Shewana3_0661 0.45 +1.1 783,162 + Shewana3_0661 0.54 +1.0 783,340 - Shewana3_0661 0.85 -0.9 783,352 - Shewana3_0661 0.87 +0.4 783,385 - +0.1 783,534 + -1.3
Or see this region's nucleotide sequence