Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0597

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmiaA and Shewana3_0597 are separated by 92 nucleotidesShewana3_0597 and Shewana3_0598 are separated by 23 nucleotides Shewana3_0596: miaA - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 699,889 to 700,779 miaA Shewana3_0597: Shewana3_0597 - RNA-binding protein Hfq (RefSeq), at 700,872 to 701,144 _0597 Shewana3_0598: Shewana3_0598 - GTP-binding protein, HSR1-related (RefSeq), at 701,168 to 702,475 _0598 Position (kb) 700 701 702Strain fitness (log2 ratio) -2 -1 0 1at 700.004 kb on + strandat 701.053 kb on + strand, within Shewana3_0597at 701.275 kb on + strandat 701.290 kb on + strandat 701.806 kb on + strand, within Shewana3_0598

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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700,004 + +1.4
701,053 + Shewana3_0597 0.66 -1.5
701,275 + -2.3
701,290 + -0.9
701,806 + Shewana3_0598 0.49 +0.6

Or see this region's nucleotide sequence