Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0580 and Shewana3_0581 are separated by 199 nucleotides Shewana3_0581 and Shewana3_0582 are separated by 248 nucleotides Shewana3_0582 and Shewana3_0583 are separated by 144 nucleotides
Shewana3_0580: Shewana3_0580 - thiopurine S-methyltransferase (RefSeq), at 680,592 to 681,248
_0580
Shewana3_0581: Shewana3_0581 - BFD/(2Fe-2S)-binding domain-containing protein (RefSeq), at 681,448 to 681,639
_0581
Shewana3_0582: Shewana3_0582 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 681,888 to 683,462
_0582
Shewana3_0583: Shewana3_0583 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 683,607 to 684,539
_0583
Position (kb) 681
682
683
684 Strain fitness (log2 ratio) -1
0
1 at 680.909 kb on - strand, within Shewana3_0580 at 680.939 kb on + strand, within Shewana3_0580 at 680.947 kb on - strand, within Shewana3_0580 at 681.035 kb on - strand, within Shewana3_0580 at 681.575 kb on - strand, within Shewana3_0581 at 682.030 kb on + strand at 682.251 kb on - strand, within Shewana3_0582 at 682.261 kb on - strand, within Shewana3_0582 at 682.321 kb on + strand, within Shewana3_0582 at 682.321 kb on + strand, within Shewana3_0582 at 682.529 kb on + strand, within Shewana3_0582 at 682.529 kb on + strand, within Shewana3_0582 at 682.529 kb on + strand, within Shewana3_0582 at 682.537 kb on - strand, within Shewana3_0582 at 682.537 kb on - strand, within Shewana3_0582 at 682.696 kb on + strand, within Shewana3_0582 at 682.797 kb on + strand, within Shewana3_0582 at 682.952 kb on + strand, within Shewana3_0582 at 683.065 kb on + strand, within Shewana3_0582 at 683.229 kb on - strand, within Shewana3_0582 at 683.411 kb on + strand at 683.419 kb on - strand at 683.944 kb on - strand, within Shewana3_0583 at 683.986 kb on - strand, within Shewana3_0583 at 684.083 kb on - strand, within Shewana3_0583 at 684.083 kb on - strand, within Shewana3_0583 at 684.255 kb on + strand, within Shewana3_0583 at 684.263 kb on - strand, within Shewana3_0583 at 684.455 kb on + strand at 684.455 kb on + strand at 684.455 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 680,909 - Shewana3_0580 0.48 +0.5 680,939 + Shewana3_0580 0.53 -0.4 680,947 - Shewana3_0580 0.54 -0.2 681,035 - Shewana3_0580 0.67 +0.2 681,575 - Shewana3_0581 0.66 +0.4 682,030 + +0.4 682,251 - Shewana3_0582 0.23 -1.1 682,261 - Shewana3_0582 0.24 +1.0 682,321 + Shewana3_0582 0.27 +1.0 682,321 + Shewana3_0582 0.27 -1.2 682,529 + Shewana3_0582 0.41 +0.8 682,529 + Shewana3_0582 0.41 +0.1 682,529 + Shewana3_0582 0.41 +1.0 682,537 - Shewana3_0582 0.41 +0.8 682,537 - Shewana3_0582 0.41 +0.2 682,696 + Shewana3_0582 0.51 +0.4 682,797 + Shewana3_0582 0.58 +0.0 682,952 + Shewana3_0582 0.68 -0.4 683,065 + Shewana3_0582 0.75 +0.2 683,229 - Shewana3_0582 0.85 -0.1 683,411 + +0.2 683,419 - -0.8 683,944 - Shewana3_0583 0.36 -1.3 683,986 - Shewana3_0583 0.41 +0.2 684,083 - Shewana3_0583 0.51 +1.0 684,083 - Shewana3_0583 0.51 -0.7 684,255 + Shewana3_0583 0.69 +0.9 684,263 - Shewana3_0583 0.70 +0.4 684,455 + +0.1 684,455 + +1.1 684,455 + -0.4
Or see this region's nucleotide sequence