Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0541

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0540 and Shewana3_0541 are separated by 104 nucleotidesShewana3_0541 and Shewana3_0542 are separated by 315 nucleotides Shewana3_0540: Shewana3_0540 - hypothetical protein (RefSeq), at 634,806 to 635,768 _0540 Shewana3_0541: Shewana3_0541 - hypothetical protein (RefSeq), at 635,873 to 636,049 _0541 Shewana3_0542: Shewana3_0542 - multi-sensor signal transduction histidine kinase (RefSeq), at 636,365 to 638,524 _0542 Position (kb) 635 636 637Strain fitness (log2 ratio) -1 0 1at 635.285 kb on + strand, within Shewana3_0540at 635.354 kb on + strand, within Shewana3_0540at 635.667 kb on - strand, within Shewana3_0540at 635.854 kb on + strandat 635.879 kb on - strandat 635.952 kb on + strand, within Shewana3_0541at 636.221 kb on - strandat 636.370 kb on - strandat 636.481 kb on + strandat 636.489 kb on - strandat 636.489 kb on - strandat 636.491 kb on - strandat 636.712 kb on - strand, within Shewana3_0542at 636.761 kb on + strand, within Shewana3_0542at 636.769 kb on - strand, within Shewana3_0542at 636.783 kb on + strand, within Shewana3_0542at 636.784 kb on + strand, within Shewana3_0542at 636.851 kb on - strand, within Shewana3_0542

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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635,285 + Shewana3_0540 0.50 +0.5
635,354 + Shewana3_0540 0.57 +0.3
635,667 - Shewana3_0540 0.89 +0.5
635,854 + +0.2
635,879 - +0.2
635,952 + Shewana3_0541 0.45 +0.7
636,221 - +0.1
636,370 - -0.1
636,481 + +0.6
636,489 - +0.7
636,489 - -0.1
636,491 - +0.5
636,712 - Shewana3_0542 0.16 +0.4
636,761 + Shewana3_0542 0.18 +0.5
636,769 - Shewana3_0542 0.19 +0.2
636,783 + Shewana3_0542 0.19 +0.1
636,784 + Shewana3_0542 0.19 -1.3
636,851 - Shewana3_0542 0.23 +0.4

Or see this region's nucleotide sequence