Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0537 and Shewana3_0538 are separated by 81 nucleotides Shewana3_0538 and Shewana3_0539 are separated by 67 nucleotides Shewana3_0539 and Shewana3_0540 are separated by 280 nucleotides
Shewana3_0537: Shewana3_0537 - aspartate kinase (RefSeq), at 631,159 to 632,601
_0537
Shewana3_0538: Shewana3_0538 - hypothetical protein (RefSeq), at 632,683 to 633,102
_0538
Shewana3_0539: Shewana3_0539 - hypothetical protein (RefSeq), at 633,170 to 634,525
_0539
Shewana3_0540: Shewana3_0540 - hypothetical protein (RefSeq), at 634,806 to 635,768
_0540
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1 at 632.196 kb on + strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.204 kb on - strand, within Shewana3_0537 at 632.320 kb on - strand, within Shewana3_0537 at 632.320 kb on - strand, within Shewana3_0537 at 632.350 kb on - strand, within Shewana3_0537 at 632.412 kb on - strand, within Shewana3_0537 at 632.672 kb on - strand at 632.674 kb on + strand at 632.780 kb on + strand, within Shewana3_0538 at 632.853 kb on + strand, within Shewana3_0538 at 632.861 kb on + strand, within Shewana3_0538 at 632.901 kb on - strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.158 kb on - strand at 633.208 kb on + strand at 633.208 kb on + strand at 633.209 kb on + strand at 633.209 kb on + strand at 633.216 kb on - strand at 633.216 kb on - strand at 633.216 kb on - strand at 633.217 kb on - strand at 633.220 kb on + strand at 633.220 kb on + strand at 633.356 kb on + strand, within Shewana3_0539 at 633.399 kb on + strand, within Shewana3_0539 at 633.405 kb on - strand, within Shewana3_0539 at 633.444 kb on - strand, within Shewana3_0539 at 633.503 kb on + strand, within Shewana3_0539 at 633.503 kb on + strand, within Shewana3_0539 at 633.543 kb on + strand, within Shewana3_0539 at 633.543 kb on + strand, within Shewana3_0539 at 633.747 kb on - strand, within Shewana3_0539 at 633.795 kb on + strand, within Shewana3_0539 at 633.846 kb on - strand, within Shewana3_0539 at 633.896 kb on - strand, within Shewana3_0539 at 633.925 kb on - strand, within Shewana3_0539 at 634.078 kb on + strand, within Shewana3_0539 at 634.105 kb on + strand, within Shewana3_0539 at 634.113 kb on - strand, within Shewana3_0539 at 634.154 kb on - strand, within Shewana3_0539 at 634.156 kb on - strand, within Shewana3_0539 at 634.204 kb on - strand, within Shewana3_0539 at 634.609 kb on - strand at 635.285 kb on + strand, within Shewana3_0540 at 635.354 kb on + strand, within Shewana3_0540
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 632,196 + Shewana3_0537 0.72 +0.7 632,196 + Shewana3_0537 0.72 -0.2 632,196 + Shewana3_0537 0.72 -1.0 632,204 - Shewana3_0537 0.72 +0.9 632,320 - Shewana3_0537 0.80 -0.9 632,320 - Shewana3_0537 0.80 -0.5 632,350 - Shewana3_0537 0.83 +1.0 632,412 - Shewana3_0537 0.87 -0.3 632,672 - -0.4 632,674 + -0.9 632,780 + Shewana3_0538 0.23 -0.3 632,853 + Shewana3_0538 0.40 -1.6 632,861 + Shewana3_0538 0.42 -0.7 632,901 - Shewana3_0538 0.52 -0.1 633,039 + Shewana3_0538 0.85 -0.5 633,039 + Shewana3_0538 0.85 -1.0 633,039 + Shewana3_0538 0.85 -0.0 633,039 + Shewana3_0538 0.85 -0.3 633,039 + Shewana3_0538 0.85 -0.3 633,158 - -0.4 633,208 + +0.5 633,208 + -0.6 633,209 + -0.0 633,209 + +0.5 633,216 - -1.4 633,216 - +0.1 633,216 - -0.7 633,217 - +0.6 633,220 + -1.7 633,220 + +0.3 633,356 + Shewana3_0539 0.14 +0.0 633,399 + Shewana3_0539 0.17 +0.9 633,405 - Shewana3_0539 0.17 -2.1 633,444 - Shewana3_0539 0.20 +0.2 633,503 + Shewana3_0539 0.25 -1.7 633,503 + Shewana3_0539 0.25 +0.3 633,543 + Shewana3_0539 0.28 -1.1 633,543 + Shewana3_0539 0.28 -0.9 633,747 - Shewana3_0539 0.43 -0.1 633,795 + Shewana3_0539 0.46 +0.8 633,846 - Shewana3_0539 0.50 +0.5 633,896 - Shewana3_0539 0.54 -0.3 633,925 - Shewana3_0539 0.56 +1.2 634,078 + Shewana3_0539 0.67 -1.0 634,105 + Shewana3_0539 0.69 -2.1 634,113 - Shewana3_0539 0.70 +0.5 634,154 - Shewana3_0539 0.73 +0.1 634,156 - Shewana3_0539 0.73 +0.6 634,204 - Shewana3_0539 0.76 +1.0 634,609 - +0.5 635,285 + Shewana3_0540 0.50 +0.5 635,354 + Shewana3_0540 0.57 +0.3
Or see this region's nucleotide sequence