Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0436 and Shewana3_0437 are separated by 75 nucleotides Shewana3_0437 and Shewana3_0438 are separated by 3 nucleotides Shewana3_0438 and Shewana3_0439 are separated by 157 nucleotides
Shewana3_0436: Shewana3_0436 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 507,146 to 509,716
_0436
Shewana3_0437: Shewana3_0437 - short chain dehydrogenase (RefSeq), at 509,792 to 510,595
_0437
Shewana3_0438: Shewana3_0438 - hypothetical protein (RefSeq), at 510,599 to 510,823
_0438
Shewana3_0439: Shewana3_0439 - hypothetical protein (RefSeq), at 510,981 to 514,202
_0439
Position (kb) 509
510
511 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 508.819 kb on - strand, within Shewana3_0436 at 508.842 kb on - strand, within Shewana3_0436 at 508.842 kb on - strand, within Shewana3_0436 at 508.847 kb on + strand, within Shewana3_0436 at 508.912 kb on - strand, within Shewana3_0436 at 509.101 kb on - strand, within Shewana3_0436 at 509.118 kb on + strand, within Shewana3_0436 at 509.118 kb on + strand, within Shewana3_0436 at 509.520 kb on - strand at 509.524 kb on + strand at 509.633 kb on + strand at 509.638 kb on + strand at 509.849 kb on - strand at 509.991 kb on - strand, within Shewana3_0437 at 510.005 kb on + strand, within Shewana3_0437 at 510.039 kb on + strand, within Shewana3_0437 at 510.167 kb on + strand, within Shewana3_0437 at 510.175 kb on - strand, within Shewana3_0437 at 510.185 kb on - strand, within Shewana3_0437 at 510.202 kb on - strand, within Shewana3_0437 at 510.234 kb on - strand, within Shewana3_0437 at 510.399 kb on - strand, within Shewana3_0437 at 510.637 kb on - strand, within Shewana3_0438 at 510.733 kb on - strand, within Shewana3_0438 at 510.793 kb on + strand, within Shewana3_0438 at 510.849 kb on + strand at 510.857 kb on - strand at 510.881 kb on - strand at 510.948 kb on + strand at 510.953 kb on + strand at 510.979 kb on + strand at 511.059 kb on + strand at 511.104 kb on - strand at 511.122 kb on - strand at 511.230 kb on - strand at 511.320 kb on + strand, within Shewana3_0439 at 511.376 kb on + strand, within Shewana3_0439
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 508,819 - Shewana3_0436 0.65 -0.2 508,842 - Shewana3_0436 0.66 -0.5 508,842 - Shewana3_0436 0.66 -1.3 508,847 + Shewana3_0436 0.66 -2.8 508,912 - Shewana3_0436 0.69 -4.1 509,101 - Shewana3_0436 0.76 +0.8 509,118 + Shewana3_0436 0.77 +0.5 509,118 + Shewana3_0436 0.77 -0.3 509,520 - +0.5 509,524 + +0.5 509,633 + -0.6 509,638 + -0.5 509,849 - +0.4 509,991 - Shewana3_0437 0.25 +0.5 510,005 + Shewana3_0437 0.26 -0.4 510,039 + Shewana3_0437 0.31 -1.0 510,167 + Shewana3_0437 0.47 -2.0 510,175 - Shewana3_0437 0.48 +0.5 510,185 - Shewana3_0437 0.49 +0.8 510,202 - Shewana3_0437 0.51 +0.1 510,234 - Shewana3_0437 0.55 +0.2 510,399 - Shewana3_0437 0.75 -1.0 510,637 - Shewana3_0438 0.17 +0.6 510,733 - Shewana3_0438 0.60 -0.8 510,793 + Shewana3_0438 0.86 +1.0 510,849 + -0.2 510,857 - +0.5 510,881 - -0.4 510,948 + +0.9 510,953 + -0.9 510,979 + -0.0 511,059 + -2.1 511,104 - +0.4 511,122 - +0.6 511,230 - +0.1 511,320 + Shewana3_0439 0.11 +0.3 511,376 + Shewana3_0439 0.12 +0.5
Or see this region's nucleotide sequence