Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0386

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0384 and Shewana3_0385 are separated by 60 nucleotidesShewana3_0385 and hemC are separated by 46 nucleotideshemC and cyaA are separated by 202 nucleotides Shewana3_0384: Shewana3_0384 - protein of unknown function DUF513, hemX (RefSeq), at 444,455 to 445,696 _0384 Shewana3_0385: Shewana3_0385 - uroporphyrinogen III synthase HEM4 (RefSeq), at 445,757 to 446,455 _0385 Shewana3_0386: hemC - porphobilinogen deaminase (RefSeq), at 446,502 to 447,434 hemC Shewana3_0387: cyaA - adenylate cyclase (RefSeq), at 447,637 to 450,051 cyaA Position (kb) 446 447 448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 445.588 kb on + strandat 447.707 kb on - strandat 447.738 kb on - strandat 447.852 kb on - strandat 447.941 kb on - strand, within cyaAat 447.977 kb on - strand, within cyaAat 447.986 kb on + strand, within cyaAat 447.994 kb on - strand, within cyaAat 447.994 kb on - strand, within cyaAat 448.001 kb on - strand, within cyaAat 448.148 kb on + strand, within cyaAat 448.166 kb on - strand, within cyaAat 448.182 kb on - strand, within cyaAat 448.254 kb on + strand, within cyaAat 448.254 kb on + strand, within cyaAat 448.262 kb on - strand, within cyaAat 448.269 kb on + strand, within cyaAat 448.343 kb on - strand, within cyaA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
445,588 + -0.6
447,707 - -1.7
447,738 - +0.3
447,852 - +0.7
447,941 - cyaA Shewana3_0387 0.13 -1.7
447,977 - cyaA Shewana3_0387 0.14 +0.6
447,986 + cyaA Shewana3_0387 0.14 -0.7
447,994 - cyaA Shewana3_0387 0.15 -2.0
447,994 - cyaA Shewana3_0387 0.15 -0.0
448,001 - cyaA Shewana3_0387 0.15 +1.6
448,148 + cyaA Shewana3_0387 0.21 -0.1
448,166 - cyaA Shewana3_0387 0.22 +0.5
448,182 - cyaA Shewana3_0387 0.23 -1.3
448,254 + cyaA Shewana3_0387 0.26 -4.2
448,254 + cyaA Shewana3_0387 0.26 +0.3
448,262 - cyaA Shewana3_0387 0.26 +0.3
448,269 + cyaA Shewana3_0387 0.26 +0.4
448,343 - cyaA Shewana3_0387 0.29 -0.8

Or see this region's nucleotide sequence