Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0267 and Shewana3_0268 are separated by 572 nucleotides Shewana3_0268 and Shewana3_0269 are separated by 304 nucleotides
Shewana3_0267: Shewana3_0267 - hypothetical protein (RefSeq), at 300,704 to 301,093
_0267
Shewana3_0268: Shewana3_0268 - site-specific DNA-methyltransferase (adenine-specific) (RefSeq), at 301,666 to 302,505
_0268
Shewana3_0269: Shewana3_0269 - diguanylate cyclase (RefSeq), at 302,810 to 304,267
_0269
Position (kb) 301
302
303 Strain fitness (log2 ratio) -1
0
1 at 300.743 kb on - strand, within Shewana3_0267 at 300.743 kb on - strand, within Shewana3_0267 at 300.764 kb on + strand, within Shewana3_0267 at 300.881 kb on + strand, within Shewana3_0267 at 300.881 kb on + strand, within Shewana3_0267 at 300.975 kb on + strand, within Shewana3_0267 at 301.004 kb on - strand, within Shewana3_0267 at 301.075 kb on - strand at 301.771 kb on + strand, within Shewana3_0268 at 301.796 kb on - strand, within Shewana3_0268 at 301.809 kb on + strand, within Shewana3_0268 at 301.819 kb on + strand, within Shewana3_0268 at 301.855 kb on + strand, within Shewana3_0268 at 301.892 kb on - strand, within Shewana3_0268 at 301.897 kb on + strand, within Shewana3_0268 at 301.915 kb on + strand, within Shewana3_0268 at 301.923 kb on - strand, within Shewana3_0268 at 301.940 kb on + strand, within Shewana3_0268 at 301.953 kb on - strand, within Shewana3_0268 at 302.047 kb on - strand, within Shewana3_0268 at 302.141 kb on - strand, within Shewana3_0268 at 302.182 kb on + strand, within Shewana3_0268 at 302.291 kb on + strand, within Shewana3_0268 at 302.299 kb on + strand, within Shewana3_0268 at 302.324 kb on + strand, within Shewana3_0268 at 302.353 kb on + strand, within Shewana3_0268 at 302.415 kb on - strand, within Shewana3_0268 at 302.856 kb on + strand at 302.864 kb on - strand at 302.912 kb on + strand at 302.912 kb on + strand at 303.238 kb on + strand, within Shewana3_0269 at 303.257 kb on - strand, within Shewana3_0269 at 303.318 kb on + strand, within Shewana3_0269 at 303.371 kb on - strand, within Shewana3_0269 at 303.385 kb on + strand, within Shewana3_0269 at 303.385 kb on + strand, within Shewana3_0269 at 303.393 kb on - strand, within Shewana3_0269 at 303.505 kb on - strand, within Shewana3_0269
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 300,743 - Shewana3_0267 0.10 +0.5 300,743 - Shewana3_0267 0.10 +0.7 300,764 + Shewana3_0267 0.15 +0.3 300,881 + Shewana3_0267 0.45 +0.4 300,881 + Shewana3_0267 0.45 -1.2 300,975 + Shewana3_0267 0.69 +0.2 301,004 - Shewana3_0267 0.77 -0.5 301,075 - +0.2 301,771 + Shewana3_0268 0.12 +0.8 301,796 - Shewana3_0268 0.15 -0.5 301,809 + Shewana3_0268 0.17 -1.1 301,819 + Shewana3_0268 0.18 +1.0 301,855 + Shewana3_0268 0.23 -0.9 301,892 - Shewana3_0268 0.27 -0.8 301,897 + Shewana3_0268 0.28 +0.0 301,915 + Shewana3_0268 0.30 +0.5 301,923 - Shewana3_0268 0.31 -0.6 301,940 + Shewana3_0268 0.33 +0.6 301,953 - Shewana3_0268 0.34 +0.5 302,047 - Shewana3_0268 0.45 +0.9 302,141 - Shewana3_0268 0.57 +0.8 302,182 + Shewana3_0268 0.61 +0.5 302,291 + Shewana3_0268 0.74 +0.5 302,299 + Shewana3_0268 0.75 +0.7 302,324 + Shewana3_0268 0.78 +0.4 302,353 + Shewana3_0268 0.82 +0.4 302,415 - Shewana3_0268 0.89 -1.0 302,856 + +0.6 302,864 - +0.4 302,912 + -0.5 302,912 + +0.4 303,238 + Shewana3_0269 0.29 +0.5 303,257 - Shewana3_0269 0.31 +0.7 303,318 + Shewana3_0269 0.35 +0.6 303,371 - Shewana3_0269 0.38 +0.4 303,385 + Shewana3_0269 0.39 -1.0 303,385 + Shewana3_0269 0.39 -1.1 303,393 - Shewana3_0269 0.40 +0.5 303,505 - Shewana3_0269 0.48 +0.9
Or see this region's nucleotide sequence