Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0266

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0265 and Shewana3_0266 are separated by 299 nucleotidesShewana3_0266 and Shewana3_0267 are separated by 149 nucleotides Shewana3_0265: Shewana3_0265 - hypothetical protein (RefSeq), at 297,172 to 299,271 _0265 Shewana3_0266: Shewana3_0266 - 2OG-Fe(II) oxygenase (RefSeq), at 299,571 to 300,554 _0266 Shewana3_0267: Shewana3_0267 - hypothetical protein (RefSeq), at 300,704 to 301,093 _0267 Position (kb) 299 300 301Strain fitness (log2 ratio) -2 -1 0 1at 298.584 kb on - strand, within Shewana3_0265at 298.801 kb on - strand, within Shewana3_0265at 298.933 kb on - strand, within Shewana3_0265at 298.967 kb on - strand, within Shewana3_0265at 299.008 kb on + strand, within Shewana3_0265at 299.126 kb on + strandat 299.134 kb on - strandat 299.188 kb on + strandat 299.191 kb on - strandat 299.221 kb on + strandat 299.296 kb on - strandat 299.530 kb on - strandat 299.856 kb on - strand, within Shewana3_0266at 299.883 kb on - strand, within Shewana3_0266at 300.040 kb on + strand, within Shewana3_0266at 300.040 kb on + strand, within Shewana3_0266at 300.057 kb on + strand, within Shewana3_0266at 300.081 kb on + strand, within Shewana3_0266at 300.135 kb on + strand, within Shewana3_0266at 300.148 kb on - strand, within Shewana3_0266at 300.223 kb on - strand, within Shewana3_0266at 300.439 kb on + strand, within Shewana3_0266at 300.508 kb on + strandat 300.646 kb on + strandat 300.646 kb on + strandat 300.646 kb on + strandat 300.654 kb on - strandat 300.654 kb on - strandat 300.654 kb on - strandat 300.743 kb on - strand, within Shewana3_0267at 300.743 kb on - strand, within Shewana3_0267at 300.764 kb on + strand, within Shewana3_0267at 300.881 kb on + strand, within Shewana3_0267at 300.881 kb on + strand, within Shewana3_0267at 300.975 kb on + strand, within Shewana3_0267at 301.004 kb on - strand, within Shewana3_0267at 301.075 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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298,584 - Shewana3_0265 0.67 +0.6
298,801 - Shewana3_0265 0.78 -0.9
298,933 - Shewana3_0265 0.84 -1.6
298,967 - Shewana3_0265 0.85 +0.8
299,008 + Shewana3_0265 0.87 -0.6
299,126 + -1.3
299,134 - -0.8
299,188 + -0.8
299,191 - -2.5
299,221 + +0.2
299,296 - +0.6
299,530 - +0.2
299,856 - Shewana3_0266 0.29 +0.6
299,883 - Shewana3_0266 0.32 -0.8
300,040 + Shewana3_0266 0.48 -2.4
300,040 + Shewana3_0266 0.48 +0.4
300,057 + Shewana3_0266 0.49 -0.9
300,081 + Shewana3_0266 0.52 +0.6
300,135 + Shewana3_0266 0.57 +0.1
300,148 - Shewana3_0266 0.59 +0.1
300,223 - Shewana3_0266 0.66 -0.7
300,439 + Shewana3_0266 0.88 +0.4
300,508 + +0.2
300,646 + +0.4
300,646 + +1.0
300,646 + +0.2
300,654 - -0.0
300,654 - -0.3
300,654 - +0.7
300,743 - Shewana3_0267 0.10 +0.5
300,743 - Shewana3_0267 0.10 +0.7
300,764 + Shewana3_0267 0.15 +0.3
300,881 + Shewana3_0267 0.45 +0.4
300,881 + Shewana3_0267 0.45 -1.2
300,975 + Shewana3_0267 0.69 +0.2
301,004 - Shewana3_0267 0.77 -0.5
301,075 - +0.2

Or see this region's nucleotide sequence