Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0262 and Shewana3_0263 are separated by 116 nucleotides Shewana3_0263 and Shewana3_0264 are separated by 311 nucleotides Shewana3_0264 and Shewana3_0265 are separated by 113 nucleotides
Shewana3_0262: Shewana3_0262 - TetR family transcriptional regulator (RefSeq), at 293,767 to 294,363
_0262
Shewana3_0263: Shewana3_0263 - hypothetical protein (RefSeq), at 294,480 to 294,791
_0263
Shewana3_0264: Shewana3_0264 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 295,103 to 297,058
_0264
Shewana3_0265: Shewana3_0265 - hypothetical protein (RefSeq), at 297,172 to 299,271
_0265
Position (kb) 295
296
297
298 Strain fitness (log2 ratio) -1
0
1 at 294.130 kb on - strand, within Shewana3_0262 at 294.169 kb on - strand, within Shewana3_0262 at 294.169 kb on - strand, within Shewana3_0262 at 294.191 kb on - strand, within Shewana3_0262 at 294.279 kb on - strand, within Shewana3_0262 at 294.642 kb on - strand, within Shewana3_0263 at 294.648 kb on - strand, within Shewana3_0263 at 294.718 kb on - strand, within Shewana3_0263 at 295.258 kb on + strand at 295.258 kb on + strand at 295.298 kb on - strand at 295.331 kb on + strand, within Shewana3_0264 at 295.458 kb on + strand, within Shewana3_0264 at 295.458 kb on + strand, within Shewana3_0264 at 295.463 kb on + strand, within Shewana3_0264 at 295.471 kb on + strand, within Shewana3_0264 at 295.498 kb on + strand, within Shewana3_0264 at 295.526 kb on + strand, within Shewana3_0264 at 295.614 kb on + strand, within Shewana3_0264 at 295.622 kb on - strand, within Shewana3_0264 at 295.645 kb on + strand, within Shewana3_0264 at 295.749 kb on + strand, within Shewana3_0264 at 296.115 kb on + strand, within Shewana3_0264 at 296.115 kb on + strand, within Shewana3_0264 at 296.115 kb on + strand, within Shewana3_0264 at 296.248 kb on + strand, within Shewana3_0264 at 296.364 kb on - strand, within Shewana3_0264 at 296.367 kb on + strand, within Shewana3_0264 at 296.418 kb on + strand, within Shewana3_0264 at 296.688 kb on + strand, within Shewana3_0264 at 296.730 kb on + strand, within Shewana3_0264 at 296.769 kb on - strand, within Shewana3_0264 at 296.788 kb on + strand, within Shewana3_0264 at 296.788 kb on + strand, within Shewana3_0264 at 296.857 kb on + strand, within Shewana3_0264 at 296.858 kb on + strand, within Shewana3_0264 at 296.924 kb on + strand at 296.924 kb on + strand at 297.013 kb on - strand at 297.052 kb on + strand at 297.369 kb on - strand at 297.380 kb on + strand at 297.380 kb on + strand at 297.388 kb on - strand, within Shewana3_0265 at 297.388 kb on - strand, within Shewana3_0265 at 297.453 kb on - strand, within Shewana3_0265 at 297.482 kb on + strand, within Shewana3_0265 at 297.482 kb on - strand, within Shewana3_0265 at 297.511 kb on - strand, within Shewana3_0265 at 297.628 kb on + strand, within Shewana3_0265 at 297.637 kb on - strand, within Shewana3_0265 at 297.659 kb on + strand, within Shewana3_0265 at 297.723 kb on - strand, within Shewana3_0265 at 297.726 kb on + strand, within Shewana3_0265 at 297.774 kb on - strand, within Shewana3_0265 at 297.847 kb on - strand, within Shewana3_0265 at 297.901 kb on - strand, within Shewana3_0265 at 297.903 kb on + strand, within Shewana3_0265 at 297.911 kb on - strand, within Shewana3_0265 at 297.921 kb on + strand, within Shewana3_0265 at 298.045 kb on - strand, within Shewana3_0265
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 294,130 - Shewana3_0262 0.61 +0.6 294,169 - Shewana3_0262 0.67 +0.9 294,169 - Shewana3_0262 0.67 -0.2 294,191 - Shewana3_0262 0.71 +0.0 294,279 - Shewana3_0262 0.86 +0.2 294,642 - Shewana3_0263 0.52 +1.5 294,648 - Shewana3_0263 0.54 +1.0 294,718 - Shewana3_0263 0.76 -0.7 295,258 + +0.1 295,258 + -1.4 295,298 - +1.1 295,331 + Shewana3_0264 0.12 +1.3 295,458 + Shewana3_0264 0.18 +0.2 295,458 + Shewana3_0264 0.18 +0.4 295,463 + Shewana3_0264 0.18 -1.2 295,471 + Shewana3_0264 0.19 +0.6 295,498 + Shewana3_0264 0.20 -1.3 295,526 + Shewana3_0264 0.22 +1.6 295,614 + Shewana3_0264 0.26 +0.2 295,622 - Shewana3_0264 0.27 -0.9 295,645 + Shewana3_0264 0.28 +0.8 295,749 + Shewana3_0264 0.33 -0.7 296,115 + Shewana3_0264 0.52 -0.7 296,115 + Shewana3_0264 0.52 +1.2 296,115 + Shewana3_0264 0.52 +0.2 296,248 + Shewana3_0264 0.59 -1.4 296,364 - Shewana3_0264 0.64 -0.0 296,367 + Shewana3_0264 0.65 +0.4 296,418 + Shewana3_0264 0.67 +0.5 296,688 + Shewana3_0264 0.81 -0.4 296,730 + Shewana3_0264 0.83 -0.4 296,769 - Shewana3_0264 0.85 +0.3 296,788 + Shewana3_0264 0.86 +0.1 296,788 + Shewana3_0264 0.86 +0.3 296,857 + Shewana3_0264 0.90 -0.8 296,858 + Shewana3_0264 0.90 -0.7 296,924 + -0.7 296,924 + -0.1 297,013 - +0.5 297,052 + +0.2 297,369 - -1.5 297,380 + +0.9 297,380 + -1.3 297,388 - Shewana3_0265 0.10 -0.6 297,388 - Shewana3_0265 0.10 -1.3 297,453 - Shewana3_0265 0.13 -0.1 297,482 + Shewana3_0265 0.15 +0.3 297,482 - Shewana3_0265 0.15 -0.5 297,511 - Shewana3_0265 0.16 +0.3 297,628 + Shewana3_0265 0.22 +0.8 297,637 - Shewana3_0265 0.22 -1.2 297,659 + Shewana3_0265 0.23 -0.4 297,723 - Shewana3_0265 0.26 -0.9 297,726 + Shewana3_0265 0.26 -1.0 297,774 - Shewana3_0265 0.29 +0.7 297,847 - Shewana3_0265 0.32 +0.4 297,901 - Shewana3_0265 0.35 +0.7 297,903 + Shewana3_0265 0.35 -0.7 297,911 - Shewana3_0265 0.35 -0.9 297,921 + Shewana3_0265 0.36 -1.5 298,045 - Shewana3_0265 0.42 +0.0
Or see this region's nucleotide sequence