Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0007

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0181 and Shewana3_R0007 are separated by 635 nucleotidesShewana3_R0007 and Shewana3_R0008 are separated by 57 nucleotidesShewana3_R0008 and Shewana3_R0009 are separated by 45 nucleotidesShewana3_R0009 and Shewana3_R0010 are separated by 271 nucleotides Shewana3_0181: Shewana3_0181 - RNP-1-like RNA-binding protein (RefSeq), at 214,781 to 215,245 _0181 Shewana3_R0007: Shewana3_R0007 - 16S ribosomal RNA (RefSeq), at 215,881 to 217,435 _R0007 Shewana3_R0008: Shewana3_R0008 - tRNA-Ile (RefSeq), at 217,493 to 217,569 _R0008 Shewana3_R0009: Shewana3_R0009 - tRNA-Ala (RefSeq), at 217,615 to 217,690 _R0009 Shewana3_R0010: Shewana3_R0010 - 23S ribosomal RNA (RefSeq), at 217,962 to 220,856 _R0010 Position (kb) 215 216 217 218Strain fitness (log2 ratio) -2 -1 0 1at 214.929 kb on - strand, within Shewana3_0181at 214.930 kb on - strand, within Shewana3_0181at 214.988 kb on - strand, within Shewana3_0181at 214.988 kb on - strand, within Shewana3_0181at 215.016 kb on - strand, within Shewana3_0181at 215.084 kb on + strand, within Shewana3_0181at 215.404 kb on - strandat 217.704 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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214,929 - Shewana3_0181 0.32 +1.1
214,930 - Shewana3_0181 0.32 +0.1
214,988 - Shewana3_0181 0.45 +0.1
214,988 - Shewana3_0181 0.45 -0.0
215,016 - Shewana3_0181 0.51 +0.2
215,084 + Shewana3_0181 0.65 -1.0
215,404 - -2.6
217,704 + -2.2

Or see this region's nucleotide sequence