Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0102 and Shewana3_0103 are separated by 2 nucleotides Shewana3_0103 and Shewana3_0104 overlap by 4 nucleotides Shewana3_0104 and Shewana3_0105 overlap by 1 nucleotides Shewana3_0105 and Shewana3_0106 are separated by 48 nucleotides
Shewana3_0102: Shewana3_0102 - no description, at 115,587 to 118,601
_0102
Shewana3_0103: Shewana3_0103 - formate dehydrogenase beta subunit (RefSeq), at 118,604 to 119,518
_0103
Shewana3_0104: Shewana3_0104 - formate dehydrogenase gamma subunit (RefSeq), at 119,515 to 120,156
_0104
Shewana3_0105: Shewana3_0105 - formate dehydrogenase accessory protein FdhE (RefSeq), at 120,156 to 121,064
_0105
Shewana3_0106: Shewana3_0106 - selenocysteine synthase (RefSeq), at 121,113 to 122,543
_0106
Position (kb)
119
120
121 Strain fitness (log2 ratio)
-2
-1
0
1 at 118.620 kb on + strand at 118.630 kb on + strand at 118.663 kb on + strand at 118.671 kb on - strand at 118.908 kb on + strand, within Shewana3_0103 at 118.923 kb on + strand, within Shewana3_0103 at 119.069 kb on + strand, within Shewana3_0103 at 119.074 kb on + strand, within Shewana3_0103 at 119.139 kb on - strand, within Shewana3_0103 at 119.154 kb on + strand, within Shewana3_0103 at 119.289 kb on + strand, within Shewana3_0103 at 119.297 kb on - strand, within Shewana3_0103 at 119.299 kb on + strand, within Shewana3_0103 at 119.301 kb on - strand, within Shewana3_0103 at 119.355 kb on + strand, within Shewana3_0103 at 119.367 kb on - strand, within Shewana3_0103 at 119.410 kb on + strand, within Shewana3_0103 at 119.490 kb on - strand at 119.819 kb on - strand, within Shewana3_0104 at 119.855 kb on - strand, within Shewana3_0104 at 119.855 kb on - strand, within Shewana3_0104 at 119.874 kb on - strand, within Shewana3_0104 at 119.879 kb on + strand, within Shewana3_0104 at 119.962 kb on + strand, within Shewana3_0104 at 120.087 kb on + strand, within Shewana3_0104 at 120.209 kb on + strand at 120.216 kb on + strand at 120.218 kb on + strand at 120.224 kb on - strand at 120.312 kb on - strand, within Shewana3_0105 at 120.391 kb on - strand, within Shewana3_0105 at 120.447 kb on - strand, within Shewana3_0105 at 120.546 kb on + strand, within Shewana3_0105 at 120.546 kb on + strand, within Shewana3_0105 at 120.656 kb on - strand, within Shewana3_0105 at 120.674 kb on + strand, within Shewana3_0105 at 120.682 kb on - strand, within Shewana3_0105 at 120.756 kb on + strand, within Shewana3_0105 at 120.813 kb on + strand, within Shewana3_0105 at 120.841 kb on - strand, within Shewana3_0105 at 121.019 kb on + strand at 121.078 kb on + strand at 121.079 kb on + strand at 121.152 kb on + strand at 121.152 kb on + strand at 121.152 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 118,620 + -1.2 118,630 + +0.2 118,663 + -0.4 118,671 - -1.1 118,908 + Shewana3_0103 0.33 +0.2 118,923 + Shewana3_0103 0.35 -1.6 119,069 + Shewana3_0103 0.51 -1.1 119,074 + Shewana3_0103 0.51 +0.2 119,139 - Shewana3_0103 0.58 +0.7 119,154 + Shewana3_0103 0.60 +0.3 119,289 + Shewana3_0103 0.75 -1.3 119,297 - Shewana3_0103 0.76 -0.7 119,299 + Shewana3_0103 0.76 +0.0 119,301 - Shewana3_0103 0.76 -1.3 119,355 + Shewana3_0103 0.82 +0.5 119,367 - Shewana3_0103 0.83 -0.7 119,410 + Shewana3_0103 0.88 -1.3 119,490 - -0.8 119,819 - Shewana3_0104 0.47 -1.5 119,855 - Shewana3_0104 0.53 -1.8 119,855 - Shewana3_0104 0.53 +0.4 119,874 - Shewana3_0104 0.56 +0.4 119,879 + Shewana3_0104 0.57 -0.4 119,962 + Shewana3_0104 0.70 +0.4 120,087 + Shewana3_0104 0.89 +0.1 120,209 + +0.3 120,216 + +0.1 120,218 + -1.1 120,224 - +1.1 120,312 - Shewana3_0105 0.17 +0.2 120,391 - Shewana3_0105 0.26 +0.6 120,447 - Shewana3_0105 0.32 +0.1 120,546 + Shewana3_0105 0.43 -0.7 120,546 + Shewana3_0105 0.43 +0.0 120,656 - Shewana3_0105 0.55 +0.3 120,674 + Shewana3_0105 0.57 +0.3 120,682 - Shewana3_0105 0.58 +0.1 120,756 + Shewana3_0105 0.66 +0.2 120,813 + Shewana3_0105 0.72 -0.2 120,841 - Shewana3_0105 0.75 -0.1 121,019 + -0.5 121,078 + +0.8 121,079 + -1.7 121,152 + +0.1 121,152 + -0.8 121,152 + -1.7
Or see this region's nucleotide sequence