Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0092 and Shewana3_0093 are separated by 29 nucleotides Shewana3_0093 and Shewana3_0094 are separated by 43 nucleotides Shewana3_0094 and Shewana3_0095 are separated by 90 nucleotides
Shewana3_0092: Shewana3_0092 - integrase catalytic subunit (RefSeq), at 103,361 to 104,164
_0092
Shewana3_0093: Shewana3_0093 - transposase (RefSeq), at 104,194 to 104,589
_0093
Shewana3_0094: Shewana3_0094 - hypothetical protein (RefSeq), at 104,633 to 105,280
_0094
Shewana3_0095: Shewana3_0095 - hypothetical protein (RefSeq), at 105,371 to 107,278
_0095
Position (kb) 104
105 Strain fitness (log2 ratio) -1
0
1 at 103.212 kb on + strand at 103.270 kb on + strand at 103.328 kb on + strand at 103.851 kb on - strand, within Shewana3_0092 at 104.385 kb on - strand, within Shewana3_0093 at 104.783 kb on - strand, within Shewana3_0094 at 104.792 kb on + strand, within Shewana3_0094 at 104.843 kb on + strand, within Shewana3_0094 at 105.130 kb on - strand, within Shewana3_0094 at 105.369 kb on + strand at 105.411 kb on + strand at 105.569 kb on + strand, within Shewana3_0095 at 105.570 kb on + strand, within Shewana3_0095 at 105.570 kb on - strand, within Shewana3_0095 at 105.570 kb on - strand, within Shewana3_0095
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 103,212 + -0.1 103,270 + +0.1 103,328 + +0.1 103,851 - Shewana3_0092 0.61 -0.9 104,385 - Shewana3_0093 0.48 +0.7 104,783 - Shewana3_0094 0.23 -1.1 104,792 + Shewana3_0094 0.25 +0.1 104,843 + Shewana3_0094 0.32 -1.3 105,130 - Shewana3_0094 0.77 +0.4 105,369 + -1.3 105,411 + +0.5 105,569 + Shewana3_0095 0.10 +1.0 105,570 + Shewana3_0095 0.10 +0.4 105,570 - Shewana3_0095 0.10 +0.3 105,570 - Shewana3_0095 0.10 +0.5
Or see this region's nucleotide sequence