Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4362 and Shewana3_4363 are separated by 49 nucleotides Shewana3_4363 and Shewana3_4364 are separated by 200 nucleotides
Shewana3_4362: Shewana3_4362 - phosphoadenosine phosphosulfate reductase (RefSeq), at 247,614 to 249,209
_4362
Shewana3_4363: Shewana3_4363 - transposase Tn3 family protein (RefSeq), at 249,259 to 252,246
_4363
Shewana3_4364: Shewana3_4364 - manganese and iron superoxide dismutase (RefSeq), at 252,447 to 253,058
_4364
Position (kb) 249
250
251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 248.585 kb on - strand, within Shewana3_4362 at 248.617 kb on - strand, within Shewana3_4362 at 248.665 kb on - strand, within Shewana3_4362 at 248.702 kb on + strand, within Shewana3_4362 at 248.741 kb on + strand, within Shewana3_4362 at 248.924 kb on - strand, within Shewana3_4362 at 249.008 kb on - strand, within Shewana3_4362 at 249.057 kb on + strand at 249.178 kb on + strand at 249.310 kb on - strand at 249.409 kb on + strand at 249.439 kb on + strand at 249.577 kb on - strand, within Shewana3_4363 at 249.577 kb on - strand, within Shewana3_4363 at 249.676 kb on - strand, within Shewana3_4363 at 249.756 kb on - strand, within Shewana3_4363 at 249.862 kb on - strand, within Shewana3_4363 at 249.862 kb on - strand, within Shewana3_4363 at 249.900 kb on + strand, within Shewana3_4363 at 250.000 kb on - strand, within Shewana3_4363 at 250.062 kb on - strand, within Shewana3_4363 at 250.084 kb on + strand, within Shewana3_4363 at 250.181 kb on + strand, within Shewana3_4363 at 250.201 kb on - strand, within Shewana3_4363 at 250.339 kb on - strand, within Shewana3_4363 at 250.341 kb on + strand, within Shewana3_4363 at 250.349 kb on - strand, within Shewana3_4363 at 250.650 kb on + strand, within Shewana3_4363 at 250.836 kb on + strand, within Shewana3_4363 at 251.060 kb on + strand, within Shewana3_4363 at 251.142 kb on - strand, within Shewana3_4363 at 251.802 kb on - strand, within Shewana3_4363 at 252.015 kb on - strand at 252.022 kb on - strand at 252.022 kb on - strand at 252.022 kb on - strand at 252.480 kb on - strand at 252.545 kb on + strand, within Shewana3_4364 at 252.604 kb on - strand, within Shewana3_4364 at 252.704 kb on - strand, within Shewana3_4364 at 253.035 kb on - strand at 253.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 248,585 - Shewana3_4362 0.61 -0.6 248,617 - Shewana3_4362 0.63 -0.1 248,665 - Shewana3_4362 0.66 -0.7 248,702 + Shewana3_4362 0.68 -0.7 248,741 + Shewana3_4362 0.71 +0.4 248,924 - Shewana3_4362 0.82 +0.8 249,008 - Shewana3_4362 0.87 -0.6 249,057 + -0.7 249,178 + -1.4 249,310 - -0.3 249,409 + -3.0 249,439 + +0.8 249,577 - Shewana3_4363 0.11 +0.4 249,577 - Shewana3_4363 0.11 -2.3 249,676 - Shewana3_4363 0.14 +0.7 249,756 - Shewana3_4363 0.17 +0.6 249,862 - Shewana3_4363 0.20 +0.0 249,862 - Shewana3_4363 0.20 +1.6 249,900 + Shewana3_4363 0.21 -0.1 250,000 - Shewana3_4363 0.25 -2.1 250,062 - Shewana3_4363 0.27 -0.3 250,084 + Shewana3_4363 0.28 -1.1 250,181 + Shewana3_4363 0.31 +0.4 250,201 - Shewana3_4363 0.32 +2.7 250,339 - Shewana3_4363 0.36 +0.4 250,341 + Shewana3_4363 0.36 -0.2 250,349 - Shewana3_4363 0.36 +0.4 250,650 + Shewana3_4363 0.47 +0.0 250,836 + Shewana3_4363 0.53 +0.5 251,060 + Shewana3_4363 0.60 -3.6 251,142 - Shewana3_4363 0.63 +0.9 251,802 - Shewana3_4363 0.85 +1.2 252,015 - -1.1 252,022 - -2.1 252,022 - +0.3 252,022 - +0.6 252,480 - -0.1 252,545 + Shewana3_4364 0.16 +1.1 252,604 - Shewana3_4364 0.26 -1.9 252,704 - Shewana3_4364 0.42 -1.4 253,035 - -0.0 253,077 - +0.3
Or see this region's nucleotide sequence