Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4305 and Shewana3_4306 are separated by 942 nucleotides Shewana3_4306 and Shewana3_4307 are separated by 84 nucleotides
Shewana3_4305: Shewana3_4305 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 192,443 to 193,609
_4305
Shewana3_4306: Shewana3_4306 - IS4 family transposase (RefSeq), at 194,552 to 195,232
_4306
Shewana3_4307: Shewana3_4307 - transposase Tn3 family protein (RefSeq), at 195,317 to 198,304
_4307
Position (kb)
194
195
196 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 193.572 kb on - strand at 193.572 kb on - strand at 193.584 kb on - strand at 193.730 kb on + strand at 193.730 kb on + strand at 193.730 kb on + strand at 193.738 kb on - strand at 193.772 kb on + strand at 193.820 kb on + strand at 193.848 kb on - strand at 193.848 kb on - strand at 193.859 kb on + strand at 193.859 kb on + strand at 193.869 kb on - strand at 193.883 kb on - strand at 193.954 kb on + strand at 193.955 kb on + strand at 194.009 kb on - strand at 194.045 kb on + strand at 194.045 kb on + strand at 194.045 kb on + strand at 194.045 kb on + strand at 194.053 kb on - strand at 194.053 kb on - strand at 194.069 kb on + strand at 194.078 kb on - strand at 194.100 kb on - strand at 194.145 kb on - strand at 194.169 kb on + strand at 194.177 kb on - strand at 194.179 kb on + strand at 194.179 kb on + strand at 194.187 kb on - strand at 194.192 kb on - strand at 194.210 kb on - strand at 194.212 kb on - strand at 194.212 kb on - strand at 194.291 kb on + strand at 194.446 kb on + strand at 194.446 kb on - strand at 194.469 kb on - strand at 194.492 kb on + strand at 194.493 kb on - strand at 195.378 kb on - strand at 195.497 kb on + strand at 195.850 kb on + strand, within Shewana3_4307 at 195.990 kb on - strand, within Shewana3_4307 at 195.990 kb on - strand, within Shewana3_4307 at 195.993 kb on + strand, within Shewana3_4307 at 196.212 kb on + strand, within Shewana3_4307 at 196.220 kb on - strand, within Shewana3_4307 at 196.220 kb on - strand, within Shewana3_4307
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 193,572 - +1.1 193,572 - -1.6 193,584 - -0.9 193,730 + +0.0 193,730 + -1.4 193,730 + +0.6 193,738 - +0.5 193,772 + +1.7 193,820 + +0.2 193,848 - +0.3 193,848 - -0.1 193,859 + +0.1 193,859 + -1.7 193,869 - +0.4 193,883 - +0.7 193,954 + -0.7 193,955 + +1.8 194,009 - -0.5 194,045 + +0.8 194,045 + +0.4 194,045 + -1.8 194,045 + +1.1 194,053 - -0.7 194,053 - +0.2 194,069 + +0.4 194,078 - -1.0 194,100 - +0.5 194,145 - -0.6 194,169 + +0.1 194,177 - +0.3 194,179 + +0.4 194,179 + -1.9 194,187 - -0.5 194,192 - +1.1 194,210 - -0.3 194,212 - +1.0 194,212 - -0.7 194,291 + +0.6 194,446 + -1.3 194,446 - +1.4 194,469 - -0.4 194,492 + -0.9 194,493 - +0.2 195,378 - -0.4 195,497 + +0.8 195,850 + Shewana3_4307 0.18 +0.8 195,990 - Shewana3_4307 0.23 -0.6 195,990 - Shewana3_4307 0.23 -0.3 195,993 + Shewana3_4307 0.23 -0.2 196,212 + Shewana3_4307 0.30 -1.3 196,220 - Shewana3_4307 0.30 -0.1 196,220 - Shewana3_4307 0.30 +0.2
Or see this region's nucleotide sequence