Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4222

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4221 and Shewana3_4222 are separated by 14 nucleotidesShewana3_4222 and Shewana3_4223 are separated by 259 nucleotides Shewana3_4221: Shewana3_4221 - hypothetical protein (RefSeq), at 93,556 to 94,818 _4221 Shewana3_4222: Shewana3_4222 - hypothetical protein (RefSeq), at 94,833 to 95,180 _4222 Shewana3_4223: Shewana3_4223 - hypothetical protein (RefSeq), at 95,440 to 96,366 _4223 Position (kb) 94 95 96Strain fitness (log2 ratio) -1 0 1at 93.928 kb on + strand, within Shewana3_4221at 94.157 kb on - strand, within Shewana3_4221at 94.173 kb on + strand, within Shewana3_4221at 94.203 kb on - strand, within Shewana3_4221at 94.492 kb on - strand, within Shewana3_4221at 94.492 kb on - strand, within Shewana3_4221at 94.769 kb on - strandat 94.852 kb on - strandat 95.025 kb on - strand, within Shewana3_4222at 95.581 kb on + strand, within Shewana3_4223at 95.705 kb on + strand, within Shewana3_4223

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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93,928 + Shewana3_4221 0.29 +1.0
94,157 - Shewana3_4221 0.48 +0.4
94,173 + Shewana3_4221 0.49 -0.4
94,203 - Shewana3_4221 0.51 +0.4
94,492 - Shewana3_4221 0.74 +0.4
94,492 - Shewana3_4221 0.74 -0.6
94,769 - +0.7
94,852 - -0.0
95,025 - Shewana3_4222 0.55 +0.2
95,581 + Shewana3_4223 0.15 +1.6
95,705 + Shewana3_4223 0.29 -0.0

Or see this region's nucleotide sequence